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AT1G29980 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G29980" - Protein of unknown function, DUF642 in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
AT1G29980Protein of unknown function, DUF642; Involved in biological_process unknown; Located in plasma membrane, anchored to membrane; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Protein of unknown function DUF642 (InterPro-IPR006946), Galactose-binding domain-like (InterPro-IPR008979); BEST Arabidopsis thaliana protein match is- Protein of unknown function, DUF642 (TAIR-AT2G34510.1); Has 291 Blast hits to 264 proteins in 21 species- Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - [...] (407 aa)    
Predicted Functional Partners:
AT4G32700
Helicase and polymerase-containing protein TEBICHI; Encodes a homolog of Drosophila MUS308 and mammalian DNA polymerase, which prevent spontaneous or DNA damage-induced production of DNA double strand breaks. Two conserved functional domains- an N-terminal superfamily II DNA/RNA helicase domain and a C-terminal prokaryotic-type DNA polymerase I domain. Required for regulated cell division and differentiation in meristems. Mutant plants show morphological defects, such as short roots, serrated leaves, and fasciation, as well as defective patterns of cell division and differentiation in [...] (2154 aa)
           
  0.904
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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