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AT1G30080 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30080" - Glycosyl hydrolase superfamily protein in Arabidopsis thaliana
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
protein homology
Your Input:
Gene Fusion
AT1G30080Glycosyl hydrolase superfamily protein; Its function is described as cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; Involved in carbohydrate metabolic process; Located in endomembrane system; Expressed in 9 plant structures; Expressed during 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Contains the following InterPro domains- Glycoside hydrolase, family 17 (InterPro-IPR000490), Glycoside hydrolase, catalytic core (InterPro-IPR017853), Glycoside hydrolase, subgroup, [...] (408 aa)    
Predicted Functional Partners:
Pathogenesis-related thaumatin superfamily protein; Contains the following InterPro domains- Thaumatin, pathogenesis-related (InterPro-IPR001938); BEST Arabidopsis thaliana protein match is- thaumatin-like protein 3 (TAIR-AT1G75030.1); Has 1591 Blast hits to 1571 proteins in 178 species- Archae - 0; Bacteria - 39; Metazoa - 54; Fungi - 86; Plants - 1401; Viruses - 2; Other Eukaryotes - 9 (source- NCBI BLink) (356 aa)
Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops) (305 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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