STRINGSTRING
AT1G30240 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30240" - Uncharacterized protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G30240Uncharacterized protein (827 aa)    
Predicted Functional Partners:
NRPA2
Nuclear RNA polymerase A2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase I which synthesizes ribosomal RNA precursors. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol I is composed of mobile elements and NRPA2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft (1178 aa)
     
        0.762
AT3G06530
ARM repeat superfamily protein; Involved in nucleolar processing of pre-18S ribosomal RNA. Involved in ribosome biosynthesis (By similarity) (2199 aa)
     
        0.723
PWP2
Periodic tryptophan protein 2 (900 aa)
     
        0.713
AT4G04940
transducin/WD40 domain-containing protein (910 aa)
     
        0.713
AT3G10530
transducin/WD40 domain-containing protein (536 aa)
     
        0.685
AT3G18600
DEAD-box ATP-dependent RNA helicase 51 (568 aa)
     
        0.683
AT5G11240
transducin/WD40 domain-containing protein (615 aa)
     
        0.666
PUM24
Pumilio 24; Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3’-UTR of target mRNAs (641 aa)
     
        0.664
AT1G63810
Uncharacterized protein (1053 aa)
     
        0.639
PRMT3
Protein arginine methyltransferase 3; Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins (601 aa)
     
        0.611
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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