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AT1G30300 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30300" - Metallo-hydrolase/oxidoreductase superfamily protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G30300Metallo-hydrolase/oxidoreductase superfamily protein; BEST Arabidopsis thaliana protein match is- Metallo-hydrolase/oxidoreductase superfamily protein (TAIR-AT4G03610.1); Has 2065 Blast hits to 2048 proteins in 545 species- Archae - 22; Bacteria - 934; Metazoa - 0; Fungi - 23; Plants - 103; Viruses - 0; Other Eukaryotes - 983 (source- NCBI BLink) (324 aa)    
Predicted Functional Partners:
CNX2
COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli moaA. Expression is abundant in all tissues examined, particularly in roots. Appears to have targeting signals for chloroplast or mitochondria; Belongs to the radical SAM superfamily. MoaA family (390 aa)
         
  0.459
CNX3
COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined, except in roots. Appears to have targeting signals for chloroplast or mitochondria (270 aa)
         
  0.459
AT3G18760
Translation elongation factor EF1B/ribosomal protein S6 family protein; Its function is described as structural constituent of ribosome, rRNA binding; Involved in translation; Located in ribosome; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Translation elongation factor EF1B/ribosomal protein S6 (InterPro-IPR014717), Ribosomal protein S6 (InterPro-IPR000529); Has 47 Blast hits to 47 proteins in 22 species- Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink) (139 aa)
         
  0.434
At3g17170
Translation elongation factor EF1B/ribosomal protein S6 family protein; REGULATOR OF FATTY-ACID COMPOSITION 3 (RFC3); Its function is described as structural constituent of ribosome, rRNA binding; Involved in translation, ribosome biogenesis; Located in ribosome, chloroplast; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Translation elongation factor EF1B/ribosomal protein S6 (InterPro-IPR014717), Ribosomal protein S6 (InterPro-IPR000529); Has 13593 Blast hits to 10425 proteins in 2441 species- Archae - 19; Bacteria - 48 [...] (314 aa)
         
  0.434
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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