STRINGSTRING
AT1G30350 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30350" - Pectate lyase in Arabidopsis thaliana
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
AT1G30350Pectate lyase (368 aa)    
Predicted Functional Partners:
PAPS1
poly(A) polymerase 1; Essential protein (PubMed-19956626). Polymerase that creates the 3’-poly(A) tail of mRNA’s (PubMed-15297145). Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus (By similarity) (713 aa)
           
  0.956
AT5G17200
Polygalacturonase (421 aa)
   
 
  0.932
VGDH1
Pectinesterase 4; Acts in the modification of cell walls via demethylesterification of cell wall pectin. Plays an important role in growth of pollen tubes in female floral tissues, possibly via enhancing the interaction between the pollen tube and female floral tissues by modification of the cell walls (588 aa)
   
 
  0.929
PPME1
Pectinesterase PPME1; Acts in the modification of cell walls via demethylesterification of cell wall pectin. Involved in the pollen tube growth and determination of pollen tube morphology (361 aa)
   
 
  0.928
QRT1
QUARTET 1; Pectinesterase required for cell type-specific pectin degradation to separate microspores (380 aa)
       
  0.919
AT5G51500
Putative pectinesterase/pectinesterase inhibitor 60; Acts in the modification of cell walls via demethylesterification of cell wall pectin (540 aa)
       
  0.919
AT5G51490
Putative pectinesterase/pectinesterase inhibitor 59; Acts in the modification of cell walls via demethylesterification of cell wall pectin (536 aa)
       
  0.919
AT5G49180
Putative pectinesterase/pectinesterase inhibitor 58 58; Acts in the modification of cell walls via demethylesterification of cell wall pectin (571 aa)
       
  0.919
AT5G27870
Pectinesterase 28; Acts in the modification of cell walls via demethylesterification of cell wall pectin (732 aa)
       
  0.919
AT5G19730
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (383 aa)
       
  0.919
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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