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AT1G30475 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30475" - BEST Arabidopsis thaliana protein match is: embryo defective 1303 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
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Cooccurence
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[Homology]
Score
AT1G30475BEST Arabidopsis thaliana protein match is- embryo defective 1303 (TAIR-AT1G56200.1); Has 148 Blast hits to 148 proteins in 34 species- Archae - 0; Bacteria - 14; Metazoa - 63; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source- NCBI BLink) (191 aa)    
Predicted Functional Partners:
PSBA
Photosystem II reaction center protein A; Photosystem II (PSII) is a light-driven water- plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors (353 aa)
           
  0.759
ALB4
OxaA/YidC-like membrane insertion protein; Homologue of the Alb3/Oxa1/YidC family. ALB4 is almost identical to the Alb3/Oxa1/YidC domain of the previously described 110 kDa inner envelope protein ARTEMIS. However, ALB4 is expressed as a separate 55 kDa protein and is located in the thylakoid membrane of chloroplasts. Analysis of a T-DNA insertion line with a reduced level of Alb4 revealed chloroplasts with an altered ultrastructure. Mutant plastids are larger, more spherical in appearance and the grana stacks within the mutant lines are less appressed than in the wild-type chloroplasts [...] (499 aa)
           
  0.756
PSAF
Photosystem I reaction center subunit III, chloroplastic; Participates in efficiency of electron transfer from plastocyanin to P700 (or cytochrome c553 in algae and cyanobacteria). This plastocyanin-docking protein contributes to the specific association of plastocyanin to PSI (221 aa)
     
   
  0.666
ATPH
ATP synthase subunit C family protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (81 aa)
           
  0.658
AT2G20820
Unknown protein; Has 36 Blast hits to 36 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (102 aa)
       
      0.608
AT1G48450
Alanine-tRNA ligase, putative (DUF760); Protein of unknown function (DUF760); Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Protein of unknown function DUF760 (InterPro-IPR008479); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF760) (TAIR-AT3G17800.1); Has 144 Blast hits to 144 proteins in 27 species- Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0 [...] (423 aa)
       
      0.608
AT2G31040
ATP synthase protein I -related; Located in chloroplast; Expressed in 22 plant structures; Expressed during 13 growth stages; Has 182 Blast hits to 182 proteins in 74 species- Archae - 0; Bacteria - 104; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 2; Other Eukaryotes - 26 (source- NCBI BLink) (350 aa)
           
  0.567
PB
ATP synthase subunit beta, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family (498 aa)
           
  0.548
RLP3
Receptor like protein 3; Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance (By similarity). Contributes, with WAKL22/RFO1, to resistance to F.oxysporum (f.) matthioli in cv. Columbia relative to cv. Ty-0 (756 aa)
           
  0.518
RLP2
Receptor-like protein 2; Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance (729 aa)
           
  0.518
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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