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AT1G30550 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30550" - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
AT1G30550S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Its function is described as methyltransferase activity; Involved in RNA capping, RNA methylation; Expressed in 21 plant structures; Expressed during 12 growth stages; Contains the following InterPro domains- RNA cap guanine-N2 methyltransferase (InterPro-IPR019012); BEST Arabidopsis thaliana protein match is- S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR-AT1G45231.2); Has 1500 Blast hits to 1060 proteins in 507 species- Archae - 106; Bacteria - 580; Metazoa - 259; Fungi - 264; Pl [...] (455 aa)    
Predicted Functional Partners:
AR401
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha (358 aa)
     
   
  0.953
CBP20
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co-transcriptionally to the 5’ cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary miRNA processing. In the CBC complex, CBP20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ABH1/CBP80 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with t [...] (257 aa)
       
 
  0.909
U2A
U2 small nuclear ribonucleoprotein A; This protein is associated with sn-RNP U2. It helps the A’ protein to bind stem loop IV of U2 snRNA (By similarity) (249 aa)
       
 
  0.878
RUXF
Probable small nuclear ribonucleoprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (96 aa)
       
 
  0.867
AT2G14285
Small nuclear ribonucleoprotein family protein; Contains the following InterPro domains- Small nuclear ribonucleoprotein SmF (InterPro-IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro-IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro-IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro-IPR010920); BEST Arabidopsis thaliana protein match is- small nuclear ribonucleoprotein F (TAIR-AT4G30220.1); Has 827 Blast hits to 827 proteins in 226 species- Archae - 76; Bacteria - 0; Metazoa - 296; Fungi - 206; Plants - 125; Viruses - 0 [...] (61 aa)
       
 
  0.867
AT3G11500
Small nuclear ribonucleoprotein family protein; Its function is described as molecular_function unknown; Located in nucleolus, nucleus, small nucleolar ribonucleoprotein complex; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Like-Sm ribonucleoprotein (LSM) domain (InterPro-IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro-IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro-IPR010920); BEST Arabidopsis thaliana protein match is- probable small nuclear ribonucleoprotein G [...] (79 aa)
       
 
  0.867
SNRNP-G
Probable small nuclear ribonucleoprotein G; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (80 aa)
       
 
  0.867
U1-70K
U1 small nuclear ribonucleoprotein 70 kDa; Mediates the splicing of pre-mRNA by binding to the loop I region of U1-snRNA (427 aa)
       
 
  0.854
AT2G43370
U11/U12 small nuclear ribonucleoprotein 35 kDa protein; May facilitate 5’ splice site recognition in the minor spliceosome. May be involved in interactions with components of the major spliceosome bound to the pyrimidine tract of an upstream U2-type intron (333 aa)
       
 
  0.854
AT4G30330
Small nuclear ribonucleoprotein family protein; Contains the following InterPro domains- Like-Sm ribonucleoprotein (LSM) domain (InterPro-IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro-IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro-IPR010920); BEST Arabidopsis thaliana protein match is- Small nuclear ribonucleoprotein family protein (TAIR-AT2G18740.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- [...] (88 aa)
     
 
  0.853
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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