STRINGSTRING
AT1G30550 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30550" - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G30550S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (455 aa)    
Predicted Functional Partners:
AT1G45231
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (538 aa)
         
 
0.800
PYRB
PYRIMIDINE B (390 aa)
           
  0.738
DRT101
Phosphoacetylglucosamine mutase; Interconverts GlcNAc-6-P and GlcNAc-1-P (556 aa)
           
  0.737
CBP20
CAP-binding protein 20; Component of the cap-binding complex (CBC), which binds co-transcriptionally to the 5’ cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary miRNA processing. In the CBC complex, CBP20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ABH1/CBP80 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structur [...] (257 aa)
       
 
  0.705
GC4
Golgin candidate 4; Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus (725 aa)
           
  0.672
AT2G47640.1
Small nuclear ribonucleoprotein D2 (109 aa)
     
      0.671
AT1G33430
Galactosyltransferase family protein; Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue (403 aa)
           
  0.670
AT2G47640
Small nuclear ribonucleoprotein D2 (109 aa)
       
      0.664
AT2G28490
Cupin domain-containing protein; Seed storage protein (511 aa)
           
  0.638
U1-70K
Encodes U1 snRNP 70K; Mediates the splicing of pre-mRNA by binding to the loop I region of U1-snRNA (427 aa)
       
 
  0.622
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (9%) [HD]