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AT1G30590 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30590" - RNA polymerase I specific transcription initiation factor RRN3 protein in Arabidopsis thaliana
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second shell of interactors
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proteins of unknown 3D structure
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G30590RNA polymerase I specific transcription initiation factor RRN3 protein; Contains the following InterPro domains- RNA polymerase I specific transcription initiation factor RRN3 (InterPro-IPR007991); BEST Arabidopsis thaliana protein match is- RNA polymerase I specific transcription initiation factor RRN3 protein (TAIR-AT2G34750.1); Has 367 Blast hits to 352 proteins in 164 species- Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 133; Plants - 65; Viruses - 0; Other Eukaryotes - 42 (source- NCBI BLink) (604 aa)    
Predicted Functional Partners:
NRPA1
DNA-directed RNA polymerase I subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic core component of RNA polymerase I which synthesizes ribosomal RNA precursors. Forms the polymerase active center together with the second largest subunit. A single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol I. A bridging helix emanates from NRPA1 and crosses the cleft near the catalytic site and is thought to promote translocation of [...] (1670 aa)
     
 
  0.945
NRPA2
DNA-directed RNA polymerase I subunit 2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase I which synthesizes ribosomal RNA precursors. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol I is composed of mobile elements and NRPA2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft (1178 aa)
     
 
  0.945
AT3G13940
DNA binding;DNA-directed RNA polymerases; Its function is described as DNA-directed RNA polymerase activity, DNA binding; Involved in transcription; Located in nucleus; Expressed in 23 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- RNA polymerase I associated factor, A49-like (InterPro-IPR009668); Has 222 Blast hits to 222 proteins in 107 species- Archae - 0; Bacteria - 2; Metazoa - 66; Fungi - 105; Plants - 33; Viruses - 0; Other Eukaryotes - 16 (source- NCBI BLink) (442 aa)
     
 
  0.940
AT1G75670
Uncharacterized protein At1g75670; DNA-directed RNA polymerases; Its function is described as DNA-directed RNA polymerase activity; Involved in transcription; Located in cellular_component unknown; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA polymerase Rpb7, N-terminal (InterPro-IPR005576); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (196 aa)
     
 
  0.932
RPC14
RNA polymerase I(A) and III(C) 14 kDa subunit (139 aa)
       
 
  0.924
ATRPAC42
ATRPAC42; Its function is described as DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; Involved in transcription; Located in nucleolus; Expressed in 19 plant structures; Expressed during 10 growth stages; Contains the following InterPro domains- DNA-directed RNA polymerase, insert domain (InterPro-IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro-IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro-IPR011263), DNA-directed RNA polymerase, RBP11-like (InterPro-IPR009025); BEST Arabidopsis thaliana protein match is- RNA polym [...] (375 aa)
     
 
  0.923
RPAC43
RNA polymerase I subunit 43 (RPAC43); Its function is described as DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; Involved in transcription; Expressed in 11 plant structures; Expressed during 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Contains the following InterPro domains- DNA-directed RNA polymerase, insert domain (InterPro-IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro-IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro-IPR011263), DNA-dir [...] (385 aa)
     
 
  0.923
AT3G25940
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (119 aa)
     
 
  0.892
AT1G61310
LRR and NB-ARC domains-containing disease resistance protein; Probable disease resistance protein (925 aa)
           
  0.839
AT5G05400
LRR and NB-ARC domains-containing disease resistance protein; Potential disease resistance protein (874 aa)
           
  0.838
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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