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AT1G30780 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30780" - F-box domain-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G30780F-box domain-containing protein (482 aa)    
Predicted Functional Partners:
AT4G19470
Leucine-rich repeat (LRR) family protein (417 aa)
           
  0.959
AT4G19080
Uncharacterized protein (327 aa)
           
  0.959
AT2G34230
Uncharacterized protein (716 aa)
           
  0.959
AT1G30600
Subtilase-like protein (832 aa)
           
  0.959
AT1G28700
Nucleotide-diphospho-sugar transferase family protein (338 aa)
           
  0.959
AT2G34840
Coatomer epsilon subunit; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity) (293 aa)
           
  0.956
AT1G28760
Uncharacterized protein (476 aa)
           
  0.956
AT2G34810
FAD-binding Berberine family protein (540 aa)
           
  0.879
ATSYP24
Syntaxin 7; Vesicle trafficking protein that functions in the secretory pathway (416 aa)
           
  0.741
AT2G35460
Late embryogenesis abundant hydroxyproline-rich glycoprotein (238 aa)
           
  0.738
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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