STRINGSTRING
AT1G30790 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30790" - F-box domain-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G30790F-box domain-containing protein (399 aa)    
Predicted Functional Partners:
AT3G58260
TRAF-like family protein (321 aa)
     
        0.435
AT3G16580
F-box/kelch-repeat protein (382 aa)
     
        0.429
AT3G45560
C3H4 type zinc finger protein (503 aa)
     
        0.426
SK14
SKP1-like 14; Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F- box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F- box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity) (149 aa)
     
        0.426
AT4G09450
SANT DNA-binding domain-containing protein (200 aa)
     
        0.424
APRR4
Pseudo-response regulator 4; Transcriptional activator that binds specifically to the DNA sequence 5’-[AG]GATT-3’ (292 aa)
     
        0.422
AT4G16030
Ribosomal protein L19e family protein (114 aa)
     
        0.419
AT4G05270
Ubiquitin family protein (129 aa)
     
        0.413
AT2G29810
Putative F-box/kelch-repeat protein (383 aa)
     
        0.412
MYB81
Myb domain protein 81 (427 aa)
     
        0.405
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (11%) [HD]