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AT1G30860 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30860" - Uncharacterized protein At1g30860 in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G30860Uncharacterized protein At1g30860; RING/U-box superfamily protein; Its function is described as zinc ion binding; Expressed in stem, stamen, pollen tube; Expressed during 4 anthesis; Contains the following InterPro domains- Zinc finger, RING-type (InterPro-IPR001841); BEST Arabidopsis thaliana protein match is- RING/U-box superfamily protein (TAIR-AT2G34920.1); Has 4912 Blast hits to 4241 proteins in 362 species- Archae - 9; Bacteria - 172; Metazoa - 2090; Fungi - 292; Plants - 512; Viruses - 97; Other Eukaryotes - 1740 (source- NCBI BLink) (730 aa)    
Predicted Functional Partners:
SK20
SKP1-like protein 20; Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F- box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F- box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity); Belongs to the SKP1 family (352 aa)
           
  0.838
AT2G27940
RING/U-box superfamily protein; Its function is described as zinc ion binding; Expressed in leaf apex, root, carpel, leaf; Expressed during LP.04 four leaves visible, 4 anthesis; Contains the following InterPro domains- Zinc finger, RING-type (InterPro-IPR001841), Zinc finger, C3HC4 RING-type (InterPro-IPR018957); BEST Arabidopsis thaliana protein match is- RING/U-box superfamily protein (TAIR-AT3G05200.1); Has 9623 Blast hits to 9595 proteins in 286 species- Archae - 0; Bacteria - 0; Metazoa - 2405; Fungi - 805; Plants - 5009; Viruses - 51; Other Eukaryotes - 1353 (source- NCBI BLink) (237 aa)
           
  0.838
ACT2
Actin-2; Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the vegetative actins (377 aa)
       
 
  0.763
AT5G22310
Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G11590.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (481 aa)
       
      0.762
ACT7
Actin-7; Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the vegetative actins which is involved in the regulation of hormone-induced plant cell proliferation and callus formation (377 aa)
       
      0.762
AME3
Serine/threonine-protein kinase AFC3; Encodes protein kinase AME3; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. Lammer subfamily (400 aa)
       
      0.762
MAP70-5
Microtubule-associated proteins 70-5; Plant-specific protein that interact with microtubules and regulates microtubule dynamics. May play a role in anisotropic cell expansion and organ growth. In association with MAP70.1, is essential for the normal banding pattern of secondary cell wall and for the proper development of xylem tracheary elements and wood formation (513 aa)
       
      0.762
EDA14
Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA; Belongs to the UTP11 family (228 aa)
       
      0.762
AT3G24740
Cellulose synthase, putative (DUF1644); Protein of unknown function (DUF1644); Contains the following InterPro domains- Protein of unknown function DUF1644 (InterPro-IPR012866); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF1644) (TAIR-AT1G68140.3); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (354 aa)
       
      0.762
AT3G11590
Uncharacterized protein F24K9.26; Unknown protein; Located in plasma membrane; Expressed in 22 plant structures; Expressed during 13 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G22310.1); Has 22320 Blast hits to 15179 proteins in 1213 species- Archae - 372; Bacteria - 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other Eukaryotes - 5824 (source- NCBI BLink) (622 aa)
       
      0.762
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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