STRINGSTRING
AT1G30880 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30880" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G30880Uncharacterized protein (120 aa)    
Predicted Functional Partners:
RPS18C
S18 ribosomal protein; Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA (152 aa)
     
        0.642
AT2G36930
Zinc finger (C2H2 type) family protein (198 aa)
     
        0.504
PFD5
Prefoldin 5; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (By similarity) (151 aa)
     
        0.467
AT3G09500
60S ribosomal protein L35-1 (123 aa)
     
        0.457
AT3G53740
60S ribosomal protein L36-2 (112 aa)
     
        0.443
AT1G75335
Uncharacterized protein (96 aa)
     
        0.435
AT1G20430
Uncharacterized protein (116 aa)
     
        0.435
AT4G39200
40S ribosomal protein S25-4 (108 aa)
     
        0.432
eEF-1Bb1
Elongation factor 1-delta 1; EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP (260 aa)
     
        0.429
AT4G09830
Uncharacterized protein (191 aa)
     
        0.427
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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