STRINGSTRING
AT1G30890 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30890" - Integral membrane HRF1-like protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G30890Integral membrane HRF1-like protein (269 aa)    
Predicted Functional Partners:
AT2G36300
Integral membrane Yip1-like protein (255 aa)
     
 
  0.859
AT3G52760
Integral membrane Yip1 family protein (257 aa)
     
 
  0.844
AT4G30260
Yip1 integral membrane domain-containing protein (280 aa)
     
 
  0.763
AT2G18840
Integral membrane Yip1-like protein (281 aa)
     
 
  0.763
PRA1.B1
PRA1 family protein B1; May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments (209 aa)
     
 
  0.630
PRA1.B6
PRA1 family protein B6; May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments (216 aa)
     
 
  0.599
RAB1A
RAB GTPase-1A; Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER) (By similarity) (202 aa)
     
 
  0.565
PRA7
PRA1 family protein F2; May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments (189 aa)
     
 
  0.535
RAB1C
RAB GTPase homolog 1C; Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER) (By similarity) (202 aa)
     
 
  0.506
MPI7
PRA1 family protein D; May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments (182 aa)
     
 
  0.486
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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