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AT1G30890 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G30890" - Integral membrane HRF1 family protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
AT1G30890Integral membrane HRF1 family protein; Contains the following InterPro domains- Hrf1 (InterPro-IPR005578); BEST Arabidopsis thaliana protein match is- Integral membrane HRF1 family protein (TAIR-AT3G59500.1); Has 474 Blast hits to 474 proteins in 183 species- Archae - 0; Bacteria - 0; Metazoa - 204; Fungi - 142; Plants - 75; Viruses - 0; Other Eukaryotes - 53 (source- NCBI BLink) (269 aa)    
Predicted Functional Partners:
AT2G36300
Integral membrane Yip1 family protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast, membrane; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Yip1 domain (InterPro-IPR006977); BEST Arabidopsis thaliana protein match is- Integral membrane Yip1 family protein (TAIR-AT3G52760.1); Has 658 Blast hits to 658 proteins in 200 species- Archae - 0; Bacteria - 0; Metazoa - 333; Fungi - 123; Plants - 111; Viruses - 0; Other Eukaryotes - 91 (source- NCBI BLink) (255 aa)
     
 
  0.875
AT3G52760
Integral membrane Yip1 family protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast, membrane; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Yip1 domain (InterPro-IPR006977); BEST Arabidopsis thaliana protein match is- Integral membrane Yip1 family protein (TAIR-AT2G36300.1); Has 535 Blast hits to 535 proteins in 194 species- Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 117; Plants - 63; Viruses - 0; Other Eukaryotes - 85 (source- NCBI BLink) (257 aa)
     
 
  0.870
SK16
SKP1-like protein 16; Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F- box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F- box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity) (170 aa)
     
   
  0.844
AT3G03360
F-box/LRR-repeat protein At3g03360; F-box/RNI-like superfamily protein; Involved in biological_process unknown; Located in chloroplast; Expressed in 19 plant structures; Expressed during 9 growth stages; Contains the following InterPro domains- F-box domain, cyclin-like (InterPro-IPR001810), F-box domain, Skp2-like (InterPro-IPR022364); BEST Arabidopsis thaliana protein match is- RNI-like superfamily protein (TAIR-AT3G18150.1); Has 2219 Blast hits to 2186 proteins in 33 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 2203; Viruses - 0; Other Eukaryotes - 10 (source- [...] (481 aa)
           
  0.839
AT1G30790
F-box and associated interaction domains-containing protein; Contains the following InterPro domains- F-box domain, cyclin-like (InterPro-IPR001810), F-box domain, Skp2-like (InterPro-IPR022364), F-box associated domain, type 3 (InterPro-IPR013187), F-box associated interaction domain (InterPro-IPR017451); BEST Arabidopsis thaliana protein match is- F-box and associated interaction domains-containing protein (TAIR-AT1G32660.1); Has 2039 Blast hits to 1970 proteins in 46 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2039; Viruses - 0; Other Eukaryotes - 0 (source- [...] (399 aa)
           
  0.839
AT3G04660
F-box and associated interaction domains-containing protein; Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (390 aa)
           
  0.838
SK19
SKP1-like protein 19; Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F- box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F- box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity); Belongs to the SKP1 family (200 aa)
           
  0.832
ASK13
SKP1-like protein 13; Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F- box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F- box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity) (154 aa)
           
  0.775
AT3G54085
Yos1-like protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Contains the following InterPro domains- Yos1-like (InterPro-IPR013880); BEST Arabidopsis thaliana protein match is- Yos1-like protein (TAIR-AT2G37975.1); Has 203 Blast hits to 203 proteins in 88 species- Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 32; Plants - 51; Viruses - 0; Other Eukaryotes - 15 (source- NCBI BLink) (78 aa)
     
 
  0.772
MEO
E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein; Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F- box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F- box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Probably implicated in incompatibility response after hybridization (150 aa)
           
  0.770
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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