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LBD4 protein (Arabidopsis thaliana) - STRING interaction network
"LBD4" - LOB domain-containing protein 4 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBD4LOB domain-containing protein 4 (172 aa)    
Predicted Functional Partners:
AT2G37810
Cysteine/Histidine-rich C1 domain family protein (233 aa)
           
  0.670
AT3G11450
DnaJ homolog subfamily C member 2 (647 aa)
           
  0.635
AT3G57800
Transcription factor bHLH60 (426 aa)
           
  0.600
LBD13
LOB domain-containing protein 13 (268 aa)
       
 
0.537
AT5G07580
ERF/AP2 transcription factor; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (274 aa)
           
  0.474
AT5G54130
Calcium-binding endonuclease/exonuclease/phosphatase family (436 aa)
           
  0.472
AT3G61720
Ca2+dependent plant phosphoribosyltransferase family protein (795 aa)
           
  0.472
AT5G65990
Transmembrane amino acid transporter family protein; Translocates aromatic and neutral amino acids such as tyrosine, tryptophan, phenylalanine, histidine, proline, leucine, valine, glutamine, as well as arginine. Transports the auxins indole-3-acetic acid (IAA) and 2,4-dichlorophenoxyacetic acid (2,4-D) (427 aa)
           
  0.449
SFP2
Sugar transporter ERD6-like 18; Sugar transporter (478 aa)
           
  0.449
UMAMIT20
Nodulin MtN21-like transporter family protein (384 aa)
           
  0.449
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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