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AT1G31940 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G31940" - Cystic fibrosis transmembrane conductance regulator in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G31940Cystic fibrosis transmembrane conductance regulator; Unknown protein; Located in plasma membrane; Expressed in 22 plant structures; Expressed during 13 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G35585.1); Has 67 Blast hits to 67 proteins in 17 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (158 aa)    
Predicted Functional Partners:
RMA3
Encodes a RING finger E3 ubiquitin ligase (243 aa)
           
  0.737
RMA2
E3 ubiquitin-protein ligase RMA2; E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of the auxin-binding protein ERABP1 (193 aa)
           
  0.697
AT5G53680
RNA-binding (RRM/RBD/RNP motifs) family protein; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in flower, petiole, leaf; Expressed during LP.04 four leaves visible, petal differentiation and expansion stage; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR-AT5G1141 [...] (169 aa)
           
  0.627
AT1G78260
RNA-binding (RRM/RBD/RNP motifs) family protein; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 21 plant structures; Expressed during 11 growth stages; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR-AT1G22330.1); Has 19754 Blast hits to 15639 proteins in 805 sp [...] (287 aa)
           
  0.627
AT1G33470
RNA-binding (RRM/RBD/RNP motifs) family protein; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in biological_process unknown; Located in cellular_component unknown; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR-AT1G22910.2); Has 6684 Blast hits to 6582 proteins in 1312 species- Archae - 0; Bacteria - 3263; Metazoa - 486; Fungi - 360; Plants [...] (245 aa)
           
  0.627
ARP1
RNA-binding (RRM/RBD/RNP motifs) family protein; Probable RNA-binding protein involved in the regulation of abscisic acid (ABA) response during seed germination. May regulate transcript levels of several germination-responsive genes under ABA (261 aa)
           
  0.613
NTL
NTF2-like (NTL); Its function is described as protein transporter activity; Involved in transport, protein import into nucleus; Located in nucleus, intracellular; Expressed in leaf whorl, sperm cell, flower, pedicel; Expressed during 4 anthesis; Contains the following InterPro domains- Nuclear transport factor 2 (InterPro-IPR002075), Nuclear transport factor 2, Eukaryote (InterPro-IPR018222); BEST Arabidopsis thaliana protein match is- nuclear transport factor 2B (TAIR-AT1G27970.1); Has 1082 Blast hits to 1082 proteins in 220 species- Archae - 0; Bacteria - 0; Metazoa - 586; Fungi - 19 [...] (132 aa)
           
  0.552
AT1G76460
RNA-binding (RRM/RBD/RNP motifs) family protein; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR-AT1G20880.2); Has 4261 Blast hits to 4252 proteins in 371 spec [...] (285 aa)
           
  0.551
AT1G20880
RNA-binding (RRM/RBD/RNP motifs) family protein; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR-AT1G76460.1); Has 7701 Blast hits to 7638 proteins in 709 spec [...] (274 aa)
           
  0.530
RMA1
E3 ubiquitin-protein ligase RMA1; E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of aquaporin PIP2-1. Forms a ubiquitin ligase complex in cooperation with the E2 enzymes UCB8/UCB10 (249 aa)
           
  0.529
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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