• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
CID11 protein (Arabidopsis thaliana) - STRING interaction network
"CID11" - Polyadenylate-binding protein-interacting protein 11 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CID11Polyadenylate-binding protein-interacting protein 11; RNA-binding protein, putative, similar to RNA-binding protein GB-CAB40027 GI-4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins (406 aa)    
Predicted Functional Partners:
AT3G56320
PAP/OAS1 substrate-binding domain superfamily; Its function is described as nucleotidyltransferase activity; Involved in biological_process unknown; Located in chloroplast; Contains the following InterPro domains- Nucleotidyl transferase domain (InterPro-IPR002934), PAP/25A-associated (InterPro-IPR002058); BEST Arabidopsis thaliana protein match is- Nucleotidyltransferase family protein (TAIR-AT2G40520.4); Has 391 Blast hits to 365 proteins in 105 species- Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 102; Plants - 177; Viruses - 0; Other Eukaryotes - 55 (source- NCBI BLink) (603 aa)
        
 
  0.957
MEE44
Nucleotidyltransferase family protein; Maternal effect embryo arrest 44 (MEE44); Its function is described as nucleotidyltransferase activity; Involved in embryo development ending in seed dormancy; Contains the following InterPro domains- Nucleotidyl transferase domain (InterPro-IPR002934), PAP/25A-associated (InterPro-IPR002058); BEST Arabidopsis thaliana protein match is- Nucleotidyltransferase family protein (TAIR-AT5G53770.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukary [...] (1481 aa)
        
 
  0.853
AT4G14270
Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins (143 aa)
            
  0.765
CID6
Polyadenylate-binding protein-interacting protein 6; Expressed protein contains PAM2 PABC interacting domain (175 aa)
      
   
  0.737
CID4
Hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI-2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI-1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2 (595 aa)
        
 
  0.720
CID7
Polyadenylate-binding protein-interacting protein 7; Smr (Small MutS Related) domain-containing protein mRNA, complete cds (563 aa)
            
  0.694
AT3G61690
Nucleotidyltransferases; Its function is described as nucleotidyltransferase activity; Expressed in 26 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Nucleotidyl transferase domain (InterPro-IPR002934); BEST Arabidopsis thaliana protein match is- PAP/OAS1 substrate-binding domain superfamily (TAIR-AT3G51620.2); Has 793 Blast hits to 566 proteins in 156 species- Archae - 0; Bacteria - 43; Metazoa - 182; Fungi - 92; Plants - 200; Viruses - 0; Other Eukaryotes - 276 (source- NCBI BLink) (1303 aa)
        
 
  0.690
CID3
Polyadenylate-binding protein-interacting protein 3; Ataxin-2-related, similar to SCA2 (GI-1770390) (Homo sapiens); similar to ataxin-2 (GI-3005020) (Mus musculus). Member of a family of PAM2 motif containing proteins (587 aa)
        
 
  0.670
ERD15
Protein EARLY RESPONSIVE TO DEHYDRATION 15; Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2 (163 aa)
      
   
  0.662
AT4G39900
Uncharacterized protein At4g39900; Unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (245 aa)
            
  0.645
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (13%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >