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UBP11 protein (Arabidopsis thaliana) - STRING interaction network
"UBP11" - Putative ubiquitin carboxyl-terminal hydrolase 11 in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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UBP11Putative ubiquitin carboxyl-terminal hydrolase 11; Recognizes and hydrolyzes the peptide bond at the C- terminal Gly of ubiquitin. Involved in the processing of poly- ubiquitin precursors as well as that of ubiquitinated proteins (By similarity) (892 aa)    
Predicted Functional Partners:
RanBPM
SPla/RYanodine receptor (SPRY) domain-containing protein; Contains the following InterPro domains- B302 (SPRY)-like (InterPro-IPR001870), CTLH, C-terminal LisH motif (InterPro-IPR006595), SPla/RYanodine receptor SPRY (InterPro-IPR003877), Ran binding protein, CRA domain (InterPro-IPR019589), SPla/RYanodine receptor subgroup (InterPro-IPR018355), LisH dimerisation motif (InterPro-IPR006594), Ran binding protein-like, CRA domain (InterPro-IPR013144); BEST Arabidopsis thaliana protein match is- SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR-AT4G09340.1); Has 35333 Blast hi [...] (467 aa)
     
 
  0.958
AT4G31760
Peroxidase superfamily protein; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue; Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily (354 aa)
           
  0.957
ATM
Serine/threonine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR) or DNA replication stalling. Plays a central role in the perception and response to both stress-induced damage in somatic cells and developmentally programmed DNA damage during meiosis. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates histone variant H2AX to form H2AXS139ph at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Involved in transcriptional regulation of RAD51, PARP1, [...] (3845 aa)
     
   
  0.680
PRPS20
Chloroplast 30S ribosomal protein S20, putative; Binds directly to 16S ribosomal RNA; Belongs to the bacterial ribosomal protein bS20 family (202 aa)
     
      0.568
AT1G21323
Dual specificity kinase; Unknown protein; Has 1 Blast hits to 1 proteins in 1 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (128 aa)
           
  0.567
PSRP3/1
30S ribosomal protein 3-1, chloroplastic; Probably a ribosomal protein or a ribosome-associated protein; Belongs to the chloroplast-specific ribosomal protein cS23 family (166 aa)
     
      0.555
PRPL28
50S ribosomal protein L28, chloroplastic; Ribosomal L28 family; Its function is described as structural constituent of ribosome; Involved in translation; Located in ribosome, chloroplast, membrane; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L28 (InterPro-IPR001383); Has 3594 Blast hits to 3594 proteins in 1265 species- Archae - 0; Bacteria - 2589; Metazoa - 1; Fungi - 7; Plants - 57; Viruses - 0; Other Eukaryotes - 940 (source- NCBI BLink) (143 aa)
     
      0.551
EMB140
EMBRYO DEFECTIVE 140; A locus involved in embryogenesis. Mutations in this locus result in embryo lethality (817 aa)
     
 
  0.527
AT1G64510
Translation elongation factor EF1B/ribosomal protein S6 family protein; Binds together with S18 to 16S ribosomal RNA (207 aa)
     
      0.513
PSRP6
Plastid-specific ribosomal protein 6 precursor (Psrp-6) - like; Belongs to the chloroplast-specific ribosomal protein cL38 family (106 aa)
     
      0.511
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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