• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G33070 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G33070" - MADS-box family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G33070MADS-box family protein; Its function is described as sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; Involved in regulation of transcription, DNA-dependent; Located in nucleus; Contains the following InterPro domains- Transcription factor, MADS-box (InterPro-IPR002100); BEST Arabidopsis thaliana protein match is- AGAMOUS-like 86 (TAIR-AT1G31630.1); Has 196 Blast hits to 190 proteins in 4 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (165 aa)    
Predicted Functional Partners:
AT4G32820
Tetratricopeptide repeat (TPR)-like superfamily protein; Its function is described as binding; Involved in biological_process unknown; Located in cellular_component unknown; Contains the following InterPro domains- Tetratricopeptide-like helical (InterPro-IPR011990), Tetratricopeptide repeat-containing (InterPro-IPR013026); Has 168 Blast hits to 155 proteins in 63 species- Archae - 8; Bacteria - 15; Metazoa - 66; Fungi - 5; Plants - 51; Viruses - 0; Other Eukaryotes - 23 (source- NCBI BLink) (1872 aa)
       
      0.463
AT1G47680
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G47700.1); Has 3 Blast hits to 3 proteins in 1 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (104 aa)
     
        0.435
AT1G21925
Encodes a Plant thionin family protein (100 aa)
     
        0.431
LOX1
Linoleate 9S-lipoxygenase 1; 9S-lipoxygenase that can use linoleic acid or linolenic acid as substrates. Plant lipoxygenases may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure. Function as regulators of root development by controlling the emergence of lateral roots (859 aa)
           
  0.430
AT3G29785
Pol-like polyprotein/retrotransposon; Unknown protein; Has 90 Blast hits to 90 proteins in 7 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (109 aa)
     
        0.429
AT3G29033
Glycine-rich protein; BEST Arabidopsis thaliana protein match is- glycine-rich protein (TAIR-AT1G44085.1); Has 270 Blast hits to 229 proteins in 72 species- Archae - 0; Bacteria - 27; Metazoa - 122; Fungi - 51; Plants - 50; Viruses - 2; Other Eukaryotes - 18 (source- NCBI BLink) (167 aa)
     
        0.429
AT4G17590
NOL1/NOP2/sun family protein; Contains the following InterPro domains- Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro-IPR001678); BEST Arabidopsis thaliana protein match is- S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR-AT4G26600.1); Has 459 Blast hits to 368 proteins in 186 species- Archae - 2; Bacteria - 0; Metazoa - 137; Fungi - 144; Plants - 100; Viruses - 0; Other Eukaryotes - 76 (source- NCBI BLink) (201 aa)
     
        0.428
AT2G22160
Cysteine proteinases superfamily protein; Its function is described as cysteine-type peptidase activity; Located in cellular_component unknown; Contains the following InterPro domains- Proteinase inhibitor I29, cathepsin propeptide (InterPro-IPR013201), Peptidase C1A, papain (InterPro-IPR013128); BEST Arabidopsis thaliana protein match is- Cysteine proteinases superfamily protein (TAIR-AT3G48350.1); Has 1699 Blast hits to 1697 proteins in 294 species- Archae - 0; Bacteria - 0; Metazoa - 537; Fungi - 0; Plants - 914; Viruses - 32; Other Eukaryotes - 216 (source- NCBI BLink) (105 aa)
     
        0.428
AT1G44085
Glycine-rich protein, putative; Glycine-rich protein; BEST Arabidopsis thaliana protein match is- glycine-rich protein (TAIR-AT3G29033.1); Has 124 Blast hits to 113 proteins in 33 species- Archae - 0; Bacteria - 18; Metazoa - 31; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 20 (source- NCBI BLink) (90 aa)
     
        0.428
AT1G43320
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Has 6 Blast hits to 4 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (118 aa)
     
        0.428
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (10%) [HD]