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RPL9B protein (Arabidopsis thaliana) - STRING interaction network
"RPL9B" - Ribosomal protein L6 family in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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RPL9BRibosomal protein L6 family; Its function is described as structural constituent of ribosome, rRNA binding; Involved in translation; Located in 7 components; Expressed in fruit, cultured cell, leaf; Contains the following InterPro domains- Ribosomal protein L6 (InterPro-IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro-IPR020040), Ribosomal protein L6, conserved site-2 (InterPro-IPR002359); BEST Arabidopsis thaliana protein match is- Ribosomal protein L6 family (TAIR-AT1G33140.1); Has 1644 Blast hits to 1643 proteins in 495 species- Archae - 312; Bacteria - 169; Metazoa - 4 [...] (194 aa)    
Predicted Functional Partners:
EMB2207
Encodes a cytoplasmic ribosomal protein; Belongs to the universal ribosomal protein uL3 family (389 aa)
 
  0.999
RPL23AB
60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA (154 aa)
 
  0.999
emb2386
Ribosomal protein L19e family protein; Embryo defective 2386 (emb2386); Its function is described as structural constituent of ribosome; Involved in translation, ribosome biogenesis, embryo development ending in seed dormancy; Located in 6 components; Expressed in 25 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Ribosomal protein L19/L19e (InterPro-IPR000196), Ribosomal protein L19/L19e, domain 3 (InterPro-IPR015974), Ribosomal protein L19/L19e, domain 1 (InterPro-IPR015972); BEST Arabidopsis thaliana protein match is- Ribosomal protein L [...] (214 aa)
 
  0.999
AT2G01250
Ribosomal protein L30/L7 family protein; Its function is described as structural constituent of ribosome, transcription regulator activity; Involved in translation; Located in 8 components; Expressed in 27 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Ribosomal protein L30, N-terminal (InterPro-IPR012988), Ribosomal protein L7, eukaryotic (InterPro-IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro-IPR000517), Ribosomal protein L30, conserved site (InterPro-IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (In [...] (242 aa)
   
  0.999
RPL23AA
Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB (154 aa)
 
  0.999
AT5G02870
Ribosomal protein L4/L1 family; Its function is described as structural constituent of ribosome; Involved in translation; Located in 8 components; Expressed in 26 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Ribosomal protein L4/L1e (InterPro-IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro-IPR013000); BEST Arabidopsis thaliana protein match is- Ribosomal protein L4/L1 family (TAIR-AT3G09630.1); Has 1138 Blast hits to 1137 proteins in 402 species- Archae - 316; Bacteria - 12; Metazoa - 270; Fungi - 177; [...] (407 aa)
 
  0.999
RPL5A
60S ribosomal protein L5-1; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl- transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome throu [...] (301 aa)
   
  0.999
AT4G31985
Ribosomal protein L39 family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in ribosome, cytosolic large ribosomal subunit; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L39e, conserved site (InterPro-IPR020083), Ribosomal protein L39e (InterPro-IPR000077); BEST Arabidopsis thaliana protein match is- Ribosomal protein L39 family protein (TAIR-AT3G02190.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazo [...] (51 aa)
   
  0.999
STV1
RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in apical-basal gynoecium patterning similar to previously described ett and mp mutants. Transformation of stv1-1 mutant with a uORF-eliminated ETT construct partially suppressed the stv1 gynoecium phenotype, implying that STV1 could influence ETT translation through its uORFs. Regulated by TCP20 (163 aa)
     
  0.999
PGY1
Encodes ribosomal protein L10aP. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2 (216 aa)
 
  0.999
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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