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AT1G33350 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G33350" - Pentatricopeptide repeat in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
protein homology
Your Input:
Gene Fusion
AT1G33350Pentatricopeptide repeat (PPR) superfamily protein; Its function is described as binding; Involved in N-terminal protein myristoylation; Located in cellular_component unknown; Expressed in 6 plant structures; Expressed during C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885), Tetratricopeptide-like helical (InterPro-IPR011990); BEST Arabidopsis thaliana protein match is- mitochondrial editing factor 21 (TAIR-AT2G20540.1); Has 34946 Blast hits [...] (538 aa)    
Predicted Functional Partners:
Pentatricopeptide repeat-containing protein At1g71060, mitochondrial; Tetratricopeptide repeat (TPR)-like superfamily protein; Involved in biological_process unknown; Expressed in 16 plant structures; Expressed during 8 growth stages; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT1G77360.1); Has 34236 Blast hits to 11484 proteins in 290 species- Archae - 3; Bacteria - 45; Metazoa - 348; Fungi - 482; Plants - 32361; Viruses - 0; Other Euka [...] (510 aa)
DNA-binding bromodomain-containing protein; Its function is described as DNA binding; Expressed in stem, male gametophyte, flower, carpel; Expressed during 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- SANT, DNA-binding (InterPro-IPR001005), Homeodomain-like (InterPro-IPR009057), Myb, DNA-binding (InterPro-IPR014778), Bromodomain (InterPro-IPR001487), MYB-like (InterPro-IPR017877); BEST Arabidopsis thaliana protein match is- DNA-binding bromodomain-containing protein (TAIR-AT3G60110.1); Has 27183 Blast hits to 17808 proteins in 1233 spe [...] (646 aa)
Chaperone DnaJ-domain superfamily protein; Its function is described as heat shock protein binding; Involved in biological_process unknown; Located in cellular_component unknown; Contains the following InterPro domains- Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro-IPR015609), Heat shock protein DnaJ, N-terminal (InterPro-IPR001623), Heat shock protein DnaJ, conserved site (InterPro-IPR018253); BEST Arabidopsis thaliana protein match is- Chaperone DnaJ-domain superfamily protein (TAIR-AT3G14200.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bac [...] (201 aa)
Uncharacterized protein At1g26610; C2H2-like zinc finger protein; Its function is described as sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; Involved in regulation of transcription; Located in intracellular; Expressed in 23 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Zinc finger, C2H2-like (InterPro-IPR015880), Zinc finger, C2H2-type (InterPro-IPR007087); BEST Arabidopsis thaliana protein match is- C2H2-like zinc finger protein (TAIR-AT1G26590.1); Has 2336 Blast hits to 2002 protein [...] (455 aa)
Chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit; Belongs to the universal ribosomal protein uL16 family (135 aa)
Homeodomain-like superfamily protein; Probable transcription factor (331 aa)
Cytochrome c oxidase, subunit III; Its function is described as cytochrome-c oxidase activity; Involved in mitochondrial electron transport, cytochrome c to oxygen; Located in membrane; Contains the following InterPro domains- Cytochrome c oxidase, subunit III (InterPro-IPR000298); BEST Arabidopsis thaliana protein match is- cytochrome c oxidase subunit 3 (TAIR-ATMG00730.1); Has 29038 Blast hits to 29025 proteins in 5946 species- Archae - 74; Bacteria - 4466; Metazoa - 19232; Fungi - 401; Plants - 673; Viruses - 0; Other Eukaryotes - 4192 (source- NCBI BLink) (265 aa)
Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex (265 aa)
Small nuclear ribonucleoprotein family protein; Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5’-3’ mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splici [...] (88 aa)
C2H2-like zinc finger protein; Mediates the regulation of male germ cell division by DUO1 (270 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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