STRINGSTRING
AT1G33350 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G33350" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G33350Pentatricopeptide repeat-containing protein (538 aa)    
Predicted Functional Partners:
AT1G71060
Pentatricopeptide repeat-containing protein (510 aa)
     
   
  0.868
AT1G72416
Chaperone DnaJ-domain containing protein (201 aa)
           
  0.862
AT1G26610
C2H2-like zinc finger protein (455 aa)
           
  0.841
AT1G11470
Pentatricopeptide repeat (PPR) superfamily protein (150 aa)
           
  0.670
AT5G52660
Myb family transcription factor; Probable transcription factor (331 aa)
     
   
  0.656
AT2G44430
DNA-binding bromodomain-containing protein (646 aa)
           
  0.631
LSM2
SM-like 2; Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5’-3’ mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related mR [...] (93 aa)
           
  0.631
AT1G26370
RNA helicase family protein; Involved in pre-mRNA splicing. Plays a role during development in processes such as meristem maintenance, leaf morphogenesis and root morphogenesis (717 aa)
     
   
  0.626
DAZ1
DUO1-ACTIVATED ZINC FINGER 1; Mediates the regulation of male germ cell division by DUO1 (270 aa)
           
  0.608
LSM8
SM-like 8 (141 aa)
           
  0.558
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (11%) [HD]