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AT1G34160 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G34160" - Tetratricopeptide repeat in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
protein homology
Your Input:
Gene Fusion
AT1G34160Tetratricopeptide repeat (TPR)-like superfamily protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT4G21065.1); Has 36841 Blast hits to 13999 proteins in 256 species- Archae - 0; Bacteria - 8; Metazoa - 78; Fungi - 94; Plants - 36058; Viruses - 0; Other Eukaryotes - 603 (source- NCBI BLink); Belongs to the PPR family. PCMP-H subfamily (581 aa)    
Predicted Functional Partners:
DNAJ heat shock N-terminal domain-containing protein; May function together with HSC70 chaperone to assist protein folding and prevent protein aggregation during salt stress in the chloroplast (Probable). Involved in root development. Required for the position-dependent cell fate determination during root hair development (465 aa)
Flavin-binding, kelch repeat, f box 1; Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles. Acts as a blue light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO3) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaf movement rhythms. Forms a complex with ’GIGANTEA’ (GI) to re [...] (619 aa)
Phosphomethylpyrimidine synthase, chloroplastic; Encodes a protein involved in thiamin biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine (HMP) or hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their devel [...] (644 aa)
Sec-independent protein translocase protein TATA, chloroplastic; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation (By similarity) (147 aa)
Thioredoxin-like 3-1, chloroplastic; Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif (214 aa)
RNA-binding (RRM/RBD/RNP motifs) family protein; Its function is described as nucleic acid binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504); BEST Arabidopsis thaliana protein match is- 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR-AT4G02485.1); Has 662 Blast hits to 662 proteins in 169 species- Archae - 0; Bacteria - 66; Metazoa - 255; Fungi - 80; Plants - 14 [...] (431 aa)
Nodulin MtN21 /EamA-like transporter family protein; Its function is described as molecular_function unknown; Located in endomembrane system, membrane; Expressed in root; Contains the following InterPro domains- Protein of unknown function DUF6, transmembrane (InterPro-IPR000620); BEST Arabidopsis thaliana protein match is- Walls Are Thin 1 (TAIR-AT1G75500.2); Has 4958 Blast hits to 4938 proteins in 907 species- Archae - 35; Bacteria - 2613; Metazoa - 8; Fungi - 3; Plants - 1244; Viruses - 0; Other Eukaryotes - 1055 (source- NCBI BLink); Belongs to the drug/metabolite transporter (DMT) [...] (360 aa)
Melanoma-associated antigen G1-like protein; Contains the following InterPro domains- MAGE protein (InterPro-IPR002190); Has 1274 Blast hits to 1260 proteins in 85 species- Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source- NCBI BLink) (237 aa)
BTB/POZ domain-containing protein At3g22104; May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (506 aa)
Transcription regulatory protein SNF2, putative; ATPase subunit of a multiprotein complex equivalent of the SWI/SNF complex that acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. Represses embryonic genes in leaves and controls shoot development and flowering. Activates flower homeotic genes. The association of BRM with its target genes requires REF6. Necessary to acquire heat stress (HS) memory, by globally binding to HS memory genes (2193 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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