STRINGSTRING
AT1G34320 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G34320" - Uncharacterized protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G34320Uncharacterized protein (657 aa)    
Predicted Functional Partners:
ATLIG4
DNA ligase 4; Efficiently joins single-strand breaks in a double- stranded polydeoxynucleotide in an ATP-dependent reaction. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break repair. May be involved for T-DNA integration even if not absolutely required. Seems to be dispensable under normal growth conditions (1219 aa)
     
        0.436
AT5G47480
RGPR-related; Required for efficient protein export from the endoplasmic reticulum (ER) to the Golgi by regulating COPII coat dynamics at the ER. Functions as a scaffold and regulator of COPII coat assembly at ER exit sites (1350 aa)
     
        0.436
AT3G55020
RabGAP/TBC domain-containing protein (777 aa)
     
        0.436
SETH5
Transducin family protein / WD-40 repeat family protein (1913 aa)
     
        0.435
MEE44
Maternal effect embryo arrest 44 (1481 aa)
     
        0.435
AT3G62900
CW-type Zinc Finger (1465 aa)
     
        0.435
AT2G41060
RNA recognition motif-containing protein; Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3’-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus (By similarity) (451 aa)
     
        0.435
EMB1135
Embryo defective 1135 (1295 aa)
     
        0.435
AT1G63490
Transcription factor jumonji (jmjC) domain-containing protein (1116 aa)
     
        0.435
AT1G50410
SNF2 and helicase domain-containing protein; Probable helicase-like transcription factor involved in transcriptional gene silencing. Associates with SUVR2 and contributes to transcriptional gene silencing at RNA-directed DNA methylation (RdDM) target loci but also at RdDM-independent target loci. May be involved in nucleosome positioning to form ordered nucleosome arrays on chromatin (PubMed-25420628). Associates with SUVR2 and functions redundantly with FRG1. Required for the efficient methylation of a broad range of RdDM target loci (PubMed-25425661) (981 aa)
     
        0.435
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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