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AT1G35180 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G35180" - TRAM, LAG1 and CLN8 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G35180TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in integral to membrane; Contains the following InterPro domains- TRAM/LAG1/CLN8 homology domain (InterPro-IPR006634); BEST Arabidopsis thaliana protein match is- TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR-AT1G35170.1); Has 191 Blast hits to 191 proteins in 65 species- Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 8; Plants - 76; Viruses - 3; Other Eukaryotes - 45 (source- NCBI BLink) (231 aa)    
Predicted Functional Partners:
IWS2
Transcription elongation factor (TFIIS) family protein; Transcription factor involved in RNA polymerase II (RNAPII) transcription regulation. Involved in transcription elongation. May function at post-recruitment and elongation steps of transcription; Belongs to the IWS1 family (406 aa)
           
  0.412
IWS1
Transcription elongation factor (TFIIS) family protein; Transcription factor involved in RNA polymerase II (RNAPII) transcription regulation. Involved in transcription elongation. May function at post-recruitment and elongation steps of transcription. May be recruited by BZR2/BES1 to target genes and promote their expression during transcription elongation process. Required for brassinosteroid (BR)-induced gene expression. Required the for regulation of numerous nitrogen-responsive genes in roots. Acts in roots to repress NRT2.1 transcription in response to high nitrogen supply. This r [...] (502 aa)
           
  0.412
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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