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RanBPM protein (Arabidopsis thaliana) - STRING interaction network
"RanBPM" - Ran-binding protein in the microtubule-organizing centre in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RanBPMRan-binding protein in the microtubule-organizing centre (467 aa)    
Predicted Functional Partners:
AT5G08560
transducin/WD40 domain-containing protein (589 aa)
     
 
  0.988
AT3G55070
LisH/CRA/RING-U-box domain-containing protein (418 aa)
     
 
  0.982
AT4G37880
LisH/CRA/RING-U-box domain-containing protein (388 aa)
     
 
  0.979
AT5G53940
Yippee-like zinc-binding protein (129 aa)
       
 
  0.937
AT2G40110
Yippee-like protein (130 aa)
       
 
  0.937
AT5G43920
transducin/WD40 domain-containing protein (523 aa)
     
 
  0.931
AT1G61150
LisH and RanBPM domain-containing protein (243 aa)
     
 
0.887
AT3G08947
ARM repeat superfamily protein (873 aa)
     
   
  0.881
AT3G08890
Uncharacterized protein (170 aa)
           
  0.877
AT3G02460
RabGAP/TBC domain-containing protein (353 aa)
     
   
  0.866
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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