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STRINGSTRING
PUM17 protein (Arabidopsis thaliana) - STRING interaction network
"PUM17" - Putative pumilio homolog 17 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurence
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[Homology]
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PUM17Putative pumilio homolog 17; Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3’ UTR of target mRNA transcripts (304 aa)    
Predicted Functional Partners:
AT1G43415
Unknown protein; Has 1 Blast hits to 1 proteins in 1 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (117 aa)
     
        0.422
AT5G36320
Encodes a ECA1 gametogenesis related family protein (118 aa)
     
        0.418
AT5G28885
Unknown protein; Contains the following InterPro domains- Protein of unknown function DUF223 (InterPro-IPR003871); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (184 aa)
     
        0.407
AT2G07200
Cysteine proteinases superfamily protein; Its function is described as cysteine-type peptidase activity; Involved in proteolysis; Located in cellular_component unknown; Contains the following InterPro domains- Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro-IPR003653); Has 37 Blast hits to 37 proteins in 3 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (151 aa)
     
        0.404
AT1G36030
Uncharacterized protein T22A15.5; F-box family protein; BEST Arabidopsis thaliana protein match is- F-box family protein (TAIR-AT2G35280.1); Has 14 Blast hits to 14 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (80 aa)
     
      0.401
AT4G03728
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Has 6 Blast hits to 6 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (141 aa)
     
        0.400
AT1G21925
Encodes a Plant thionin family protein (100 aa)
     
        0.400
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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