STRINGSTRING
LBD5 protein (Arabidopsis thaliana) - STRING interaction network
"LBD5" - LOB domain-containing protein 5 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBD5LOB domain-containing protein 5 (122 aa)    
Predicted Functional Partners:
AT5G15060
LOB domain-containing protein 34 (141 aa)
     
   
  0.821
LBD35
LOB domain-containing protein 35 (206 aa)
     
   
  0.766
LBD31
LOB domain-containing protein 31 (220 aa)
           
  0.738
LBD19
LOB domain-containing protein 19 (191 aa)
           
  0.710
LBD32
LOB domain-containing protein 32 (192 aa)
     
   
  0.706
PPI3A
Uncharacterized protein; May regulate plasma membrane ATPase activity (576 aa)
           
  0.670
LBD20
LOB domain-containing protein 20 (273 aa)
           
  0.670
LBD14
LOB domain-containing protein 14 (188 aa)
           
  0.636
AT1G78060
Putative beta-D-xylosidase 7 (767 aa)
           
  0.632
AT5G63100
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (329 aa)
           
  0.601
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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