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STRINGSTRING
LBD5 protein (Arabidopsis thaliana) - STRING interaction network
"LBD5" - LOB domain-containing protein 5 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
LBD5LOB domain-containing protein 5 (LBD5); Contains the following InterPro domains- Lateral organ boundaries, LOB (InterPro-IPR004883); BEST Arabidopsis thaliana protein match is- LOB domain-containing protein 8 (TAIR-AT2G19510.1); Has 767 Blast hits to 763 proteins in 20 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 767; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (122 aa)    
Predicted Functional Partners:
LBD35
LOB domain-containing protein 35 (LBD35); Involved in biological_process unknown; Located in endomembrane system; Contains the following InterPro domains- Lateral organ boundaries, LOB (InterPro-IPR004883); BEST Arabidopsis thaliana protein match is- LOB domain-containing protein 32 (TAIR-AT4G22700.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (206 aa)
     
   
  0.780
AUL1
Auxin-like 1 protein (AUL1); Its function is described as heat shock protein binding; Involved in protein folding; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Heat shock protein DnaJ, N-terminal (InterPro-IPR001623); BEST Arabidopsis thaliana protein match is- Chaperone DnaJ-domain superfamily protein (TAIR-AT4G36520.1); Has 43064 Blast hits to 29150 proteins in 1965 species- Archae - 316; Bacteria - 7312; Metazoa - 16664; Fungi - 4671; Plants - 2417; Viruses - 306; Other Eukaryotes - 11378 (source- NCBI BLink) (1448 aa)
           
  0.737
LBD32
LOB domain-containing protein 32 (LBD32); Contains the following InterPro domains- Lateral organ boundaries, LOB (InterPro-IPR004883); BEST Arabidopsis thaliana protein match is- LOB domain-containing protein 35 (TAIR-AT5G35900.1); Has 784 Blast hits to 780 proteins in 21 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 784; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (192 aa)
           
  0.710
TON1B
Protein TONNEAU 1b; Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1B appears to be redundant with TON1A. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1B associates with plant centrin CEN1 (257 aa)
           
  0.692
AT3G28480
Oxoglutarate/iron-dependent oxygenase; Catalyzes the post-translational formation of 4- hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins; Belongs to the P4HA family (324 aa)
           
  0.645
LBD38
LOB domain-containing protein 38 (LBD38); Contains the following InterPro domains- Lateral organ boundaries, LOB (InterPro-IPR004883); BEST Arabidopsis thaliana protein match is- LOB domain-containing protein 37 (TAIR-AT5G67420.1); Has 581 Blast hits to 580 proteins in 26 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 581; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (247 aa)
           
  0.644
LBD41
LOB domain-containing protein 41 (LBD41); Contains the following InterPro domains- Lateral organ boundaries, LOB (InterPro-IPR004883), Asymmetric leaves, AS2/LOB (InterPro-IPR017414); BEST Arabidopsis thaliana protein match is- LOB domain-containing protein 40 (TAIR-AT1G67100.1); Has 601 Blast hits to 600 proteins in 23 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 601; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (263 aa)
           
  0.642
NFXL2
NF-X1-type zinc finger protein NFXL2; Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Pa [...] (880 aa)
           
  0.641
AT4G12780
Chaperone DnaJ-domain superfamily protein; Promotes uncoating of clathrin-coated vesicles. May interact directly with clathrin (904 aa)
           
  0.626
LBD40
LOB domain-containing protein 40 (LBD40); Contains the following InterPro domains- Lateral organ boundaries, LOB (InterPro-IPR004883); BEST Arabidopsis thaliana protein match is- LOB domain-containing protein 41 (TAIR-AT3G02550.1); Has 635 Blast hits to 634 proteins in 26 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 635; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (233 aa)
           
  0.626
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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