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AT1G40390 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G40390" - DNAse I-like superfamily protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G40390DNAse I-like superfamily protein (426 aa)    
Predicted Functional Partners:
AT1G49390
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein (348 aa)
           
  0.987
VAR3
VARIEGATED 3; Probable component of some protein complex required for chloroplast and palisade cell development (758 aa)
           
  0.732
VAR1
VARIEGATED 1; Part of a complex that function as an ATP-dependent zinc metallopeptidase. Involved in the thylakoid formation and in the removal of damaged D1 in the photosystem II, preventing cell death under high-intensity light conditions. Not involved in the degradation of the light-harvesting complex of photosystem II (LHC II) or in thermotolerance (704 aa)
           
  0.474
VAR2
VARIEGATED 2; Part of a complex that function as an ATP-dependent zinc metallopeptidase. Involved in the thylakoid formation and in the removal of damaged D1 in the photosystem II, preventing cell death under high-intensity light conditions, but not involved in thermotolerance (695 aa)
           
  0.443
AT5G34869
Uncharacterized protein (271 aa)
     
        0.436
AT5G01080
Beta-galactosidase related protein (184 aa)
     
        0.436
AT5G33898
Uncharacterized protein (248 aa)
     
        0.435
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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