STRINGSTRING
AT1G42440 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G42440" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G42440Uncharacterized protein (793 aa)    
Predicted Functional Partners:
AT2G34357
ARM repeat superfamily protein (1280 aa)
     
 
  0.999
AT4G23540
ARM repeat superfamily protein (1131 aa)
     
 
  0.999
AT1G31660
Putative bystin (444 aa)
     
 
  0.998
AT5G41190
RNA-binding protein NOB1 (602 aa)
     
 
  0.997
AT3G13230
RNA-binding protein PNO1 (215 aa)
     
 
  0.997
NSN1
Nucleostemin-like 1; Involved in the differentiation of epidermal cells, probably via the regulation of the expression of meristem-related genes (e.g. CLV3, STM, KNAT1, CUC2 and AG) and of leaf polarity- related genes (e.g. YAB5, FIL, AS2, PHB and PHV) (PubMed-22058024, PubMed-22357616). May play a role in regulating cellular proliferation (By similarity). Necessary for flower development, probably by preventing apical dominance through the down- regulation of AG expression (PubMed-22357616). Required for embryogenesis, leaf and cotyledon development, as well as for leaf polarity estab [...] (582 aa)
     
 
  0.996
AT3G49990
Uncharacterized protein (502 aa)
     
 
  0.995
AT3G11964
RNA binding protein; Involved in the biogenesis of ribosomal RNA (rRNA). Required for the formation of 5.8S rRNA. Required for normal development of female gametophytes (1896 aa)
     
   
  0.994
EMB3129
GTP-binding protein; GTPase that may function in chloroplast ribosome assembly (Probable) (372 aa)
     
 
  0.993
AT1G27470
Transducin family protein / WD-40 repeat family protein (810 aa)
     
   
  0.992
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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