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AT1G43245 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G43245" - SET domain-containing protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G43245SET domain-containing protein; Contains the following InterPro domains- SET domain (InterPro-IPR001214); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink); Belongs to the class V-like SAM-binding methyltransferase superfamily (558 aa)    
Predicted Functional Partners:
ASHH4
Putative histone-lysine N-methyltransferase ASHH4; Histone methyltransferase (352 aa)
           
  0.809
SDG40
SET domain group 40 (SDG40); Contains the following InterPro domains- SET domain (InterPro-IPR001214); BEST Arabidopsis thaliana protein match is- SET domain-containing protein (TAIR-AT3G55080.1); Has 770 Blast hits to 763 proteins in 162 species- Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 160; Plants - 288; Viruses - 0; Other Eukaryotes - 108 (source- NCBI BLink); Belongs to the class V-like SAM-binding methyltransferase superfamily (491 aa)
           
  0.771
AT2G04280
Uncharacterized protein At2g04280; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Expressed in 24 plant structures; Expressed during 13 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G12700.1); Has 130 Blast hits to 130 proteins in 16 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source- NCBI BLink) (568 aa)
           
  0.770
TPR9
Tetratricopeptide repeat (TPR)-like superfamily protein; Its function is described as binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- SET domain (InterPro-IPR001214), Tetratricopeptide TPR-1 (InterPro-IPR001440), Tetratricopeptide-like helical (InterPro-IPR011990), Tetratricopeptide repeat-containing (InterPro-IPR013026), Tetratricopeptide repeat (InterPro-IPR019734); BEST Arabidopsis thaliana protein match is- tetratricopetide-repeat thi [...] (798 aa)
           
  0.668
ASHH3
Histone-lysine N-methyltransferase ASHH3; Histone methyltransferase (363 aa)
           
  0.643
ASHH1
Histone-lysine N-methyltransferase ASHH1; Histone methyltransferase involved in regulation of flowering time. Required for the expression of the SOC1/AGL20 gene. Required for histone H3 trimethylation on ’Lys-4’ (H3K4me3) at the SOC1 locus. Prevents trimethylation on ’Lys-27’ (H3K27me3) at the same locus; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily (492 aa)
           
  0.623
ATXR5
Histone-lysine N-methyltransferase ATXR5; Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation (379 aa)
           
  0.601
SDG25
Histone-lysine N-methyltransferase ATXR7; Histone methyltransferase involved in regulation of flowering time. Required for the expression of the flowering repressors FLC and MADS-box genes of the MAF family. Required for histone H3 dimethylation on ’Lys-36’ H3K36me2 at the FLC locus. Required for histone H3 trimethylation on ’Lys- 4’ (H3K4me3) at the FLC locus. Prevents trimethylation on ’Lys-27’ (H3K27me3) at the same locus. Involved in the control of seed dormancy and germination (1423 aa)
           
  0.593
SDG4
Histone-lysine N-methyltransferase ASHR3; Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily (497 aa)
           
  0.563
SDG11
Putative inactive histone-lysine N-methyltransferase family member SUVH10; Predicted to encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain (312 aa)
           
  0.515
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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