STRINGSTRING
AT1G43245 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G43245" - SET domain-containing protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G43245SET domain-containing protein (558 aa)    
Predicted Functional Partners:
AT1G51310
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (497 aa)
           
  0.912
AT2G04280
Uncharacterized protein (568 aa)
           
  0.808
AT5G19960
RNA recognition motif-containing protein (337 aa)
           
  0.740
AT1G56145
Leucine-rich repeat transmembrane protein kinase (1039 aa)
           
  0.709
AT3G07080
EamA-like transporter (438 aa)
           
  0.676
AT1G13640
Phosphatidylinositol 3-and 4-kinase-like protein; The phosphorylation of phosphatidylinositol (PI) to PI4P is the first committed step in the generation of phosphatidylinositol 4,5-bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate (InsP3) (622 aa)
           
  0.672
AT3G06530
ARM repeat superfamily protein; Involved in nucleolar processing of pre-18S ribosomal RNA. Involved in ribosome biosynthesis (By similarity) (2199 aa)
           
  0.670
AT1G15190
Fasciclin-like arabinogalactan protein 19; May be a cell surface adhesion protein (248 aa)
           
  0.581
TLP5
Member of TLP family (429 aa)
           
  0.559
FMOGS-OX5
Flavin-monooxygenase glucosinolate S-oxygenase 5; Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Specific for 8-methylthiooctyl (8-MTO) glucosinolates (459 aa)
           
  0.559
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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