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AT1G43580 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G43580" - Sphingomyelin synthetase family protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G43580Sphingomyelin synthetase family protein; Has 50 Blast hits to 47 proteins in 19 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 8 (source- NCBI BLink) (421 aa)    
Predicted Functional Partners:
AT3G44330
Nicalin; May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning (565 aa)
     
        0.906
CM2
Encodes chorismate mutase AtCM2 (265 aa)
     
        0.905
RLF
Cytochrome b5 domain-containing protein RLF; Involved in the control of lateral root (LR) formation. Acts a positive regulator of early cell divisions involved in LR initiation, independentely of ARF7 and ARF19-mediated auxin signaling; Belongs to the cytochrome b5 family (211 aa)
     
        0.905
GOS12
Golgi SNAP receptor complex member 1-2; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor (By similarity) (257 aa)
     
        0.905
AT2G05120
Nuclear pore complex protein NUP133; Nucleoporin, Nup133/Nup155-like; Located in chloroplast; Expressed in 16 plant structures; Expressed during 9 growth stages; Contains the following InterPro domains- Nucleoporin, Nup133/Nup155-like, N-terminal (InterPro-IPR014908), Nucleoporin, Nup133/Nup155-like, C-terminal (InterPro-IPR007187); Has 161 Blast hits to 161 proteins in 58 species- Archae - 0; Bacteria - 2; Metazoa - 99; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 10 (source- NCBI BLink) (1285 aa)
     
        0.905
RFC2
Replication factor C subunit 2; May be involved in DNA replication and thus regulate cell proliferation (333 aa)
     
        0.905
AT5G55100
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Its function is described as RNA binding; Involved in RNA processing; Located in cellular_component unknown; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Splicing factor, suppressor of white apricot (InterPro-IPR019147), SWAP/Surp (InterPro-IPR000061); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (844 aa)
     
        0.904
PAP15
Encodes PAP15, a purple acid phosphatase with phytase activity. Expression of PAP15 is developmentally and temporally regulated, with strong expression at the early stages of seedling growth and pollen germination. The expression is also organ/tissue-specific, with strongest expression in the vasculature, pollen grains, and roots. Recombinant PAP protein exhibits broad substrate specificity with moderate phytase activity. PAP15 likely mobilizes phosphorus reserves in plants, particularly during seed and pollen germination (532 aa)
     
   
  0.902
PAP13
Purple acid phosphatase 13 (PAP13); Its function is described as acid phosphatase activity; Involved in biological_process unknown; Located in endomembrane system; Expressed in 6 plant structures; Expressed during 4 anthesis, C globular stage; Contains the following InterPro domains- Purple acid phosphatase, N-terminal (InterPro-IPR015914), Metallophosphoesterase (InterPro-IPR004843), Purple acid phosphatase-like, N-terminal (InterPro-IPR008963); BEST Arabidopsis thaliana protein match is- purple acid phosphatase 15 (TAIR-AT3G07130.1); Has 35333 Blast hits to 34131 proteins in 2444 spe [...] (545 aa)
     
   
  0.902
EDA10
Brefeldin A-inhibited guanine nucleotide-exchange protein 3; Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting (By similarity). Involved both in the nuclear division phase and in the nuclear fusion phase (1750 aa)
     
        0.901
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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