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AT1G43600 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G43600" - Haloacid dehalogenase-like hydrolase in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G43600Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Its function is described as phosphoprotein phosphatase activity; Involved in biological_process unknown; Located in nucleus; Contains the following InterPro domains- FCP1-like phosphatase, phosphatase domain (InterPro-IPR011947), NLI interacting factor (InterPro-IPR004274); BEST Arabidopsis thaliana protein match is- Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR-AT1G43610.1); Has 1645 Blast hits to 1642 proteins in 223 species- Archae - 0; Bacteria - 0; Metazoa - 496; Fungi - 260; Plants - 392; Viru [...] (221 aa)    
Predicted Functional Partners:
AT3G52270
Transcription initiation factor IIF, beta subunit; Its function is described as RNA polymerase II transcription factor activity, catalytic activity, ATP binding; Involved in transcription initiation from RNA polymerase II promoter; Located in transcription factor TFIIF complex; Expressed in 9 plant structures; Expressed during M germinated pollen stage, 4 anthesis, F mature embryo stage, petal differentiation and expansion stage; Contains the following InterPro domains- Winged helix-turn-helix transcription repressor DNA-binding (InterPro-IPR011991), Transcription Factor IIF, Rap30/Rap [...] (269 aa)
     
  0.955
AT1G75510
Transcription initiation factor IIF, beta subunit; Its function is described as RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity; Involved in transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter; Located in mitochondrion, transcription factor TFIIF complex; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Winged helix-turn-helix transcription repressor DNA [...] (261 aa)
     
  0.955
NRPB7
DNA-directed RNA polymerase II subunit 7; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB7 is part of a subcomplex with NRPB4 that binds to a pocket formed by NRPB1, NRPB2 and NRPB6 at the base of the clamp element. The NRBP4-NRPB7 subcomplex se [...] (176 aa)
       
  0.954
NRPB4
DNA-directed RNA polymerase II subunit 4; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other (138 aa)
     
  0.952
KTF1
Kow domain-containing transcription factor 1; Effector of RNA-directed DNA methylation (RdDM) triggered by small interfering RNAs (siRNAs, 24-nt RNAs). Functions as an adapter protein that binds scaffold transcripts generated by polymerase V and recruits AGO4 and AGO4-bound siRNAs to form an RdDM effector complex. Promotes the expression of 24-nt RNAs. Required for the initial establishment of DNA methylation. Together with AGO4, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci (1493 aa)
     
  0.937
GTA2
Putative transcription elongation factor SPT5 homolog 1; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity) (1041 aa)
     
  0.937
AT2G34210
Putative transcription elongation factor SPT5 homolog 2; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity) (989 aa)
     
  0.937
NRPB1
DNA-directed RNA polymerase II subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB1 is part of the core element with the central large clef [...] (1839 aa)
     
  0.934
SPT42
Transcription elongation factor SPT4 homolog 2; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity) (116 aa)
       
  0.933
CDKD1;1
Cyclin-dependent kinase D1;1; Cyclin dependent kinase activator CDKD;1. Nuclear localization. Involved in cell cycle regulation and cell differentiation (398 aa)
     
  0.931
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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