• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G43760 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G43760" - DNAse I-like superfamily protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G43760DNAse I-like superfamily protein; Contains the following InterPro domains- Endonuclease/exonuclease/phosphatase (InterPro-IPR005135), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro-IPR015706); BEST Arabidopsis thaliana protein match is- DNAse I-like superfamily protein (TAIR-AT1G40390.1); Has 1816 Blast hits to 1744 proteins in 56 species- Archae - 0; Bacteria - 6; Metazoa - 164; Fungi - 4; Plants - 1633; Viruses - 0; Other Eukaryotes - 9 (source- NCBI BLink) (626 aa)    
Predicted Functional Partners:
AT2G01050
Zinc ion binding;nucleic acid binding; Its function is described as zinc ion binding, nucleic acid binding; Involved in biological_process unknown; Located in cellular_component unknown; Contains the following InterPro domains- Zinc finger, CCHC-type (InterPro-IPR001878); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G31430.1); Has 369 Blast hits to 365 proteins in 15 species- Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 367; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (515 aa)
 
 
   
  0.971
ORF158
Uncharacterized mitochondrial protein AtMg00860; DNA/RNA polymerases superfamily protein (158 aa)
           
  0.969
AT3G01410
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Its function is described as ribonuclease H activity, nuclease activity, nucleic acid binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 12 plant structures; Expressed during 7 growth stages; Contains the following InterPro domains- Polynucleotidyl transferase, ribonuclease H fold (InterPro-IPR012337), Ribonuclease H (InterPro-IPR002156); BEST Arabidopsis thaliana protein match is- RNase H family protein (TAIR-AT1G24090.1); Has 3179 Blast hits to 3179 proteins in 588 [...] (294 aa)
           
  0.968
CRK8
Cysteine-rich RLK (RECEPTOR-like protein kinase) 8; Encodes a cysteine-rich receptor-like protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. CRK subfamily (1262 aa)
           
  0.967
AT4G27700
Rhodanese/Cell cycle control phosphatase superfamily protein; Its function is described as molecular_function unknown; Involved in aging; Located in chloroplast thylakoid membrane, chloroplast; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Rhodanese-like (InterPro-IPR001763); BEST Arabidopsis thaliana protein match is- Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR-AT3G08920.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5 [...] (224 aa)
           
  0.903
AT5G41970
Metal-dependent protein hydrolase; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in mitochondrion; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Metal-dependent protein hydrolase (InterPro-IPR003226); BEST Arabidopsis thaliana protein match is- Metal-dependent protein hydrolase (TAIR-AT3G49320.1); Has 677 Blast hits to 672 proteins in 331 species- Archae - 0; Bacteria - 213; Metazoa - 146; Fungi - 144; Plants - 55; Viruses - 0; Other Eukaryotes - 119 (source- NCBI BLink) (373 aa)
           
  0.890
AT5G53500
Transducin/WD40 repeat-like superfamily protein; Contains the following InterPro domains- WD40 repeat 2 (InterPro-IPR019782), WD40 repeat-like-containing domain (InterPro-IPR011046), WD40-repeat-containing domain (InterPro-IPR017986), WD40/YVTN repeat-like-containing domain (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680), WD40 repeat, subgroup (InterPro-IPR019781), G-protein beta WD-40 repeat, region (InterPro-IPR020472); BEST Arabidopsis thaliana protein match is- Transducin/WD40 repeat-like superfamily protein (TAIR-AT5G24320.1); Has 1807 Blast hits to 1807 proteins in 277 spe [...] (654 aa)
     
   
  0.740
GB2
Ras-related protein RABB1b; Intracellular vesicle trafficking and protein transport (211 aa)
           
  0.733
RIP1
Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial; Involved in organellar RNA editing. Required for the processing of numerous RNA editing sites in mitochondria and plastids. Binds to the plastid RARE1 factor, a pentatricopeptide repeat-containing protein involved in RNA editing (395 aa)
           
  0.565
GDAP1
GRIP-related ARF-binding domain-containing protein 1; This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC3 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (161 aa) portion of the protein (712 aa)
           
  0.459
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (9%) [HD]