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AT1G43860 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G43860" - Sequence-specific DNA binding transcription factors in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G43860Sequence-specific DNA binding transcription factors; Contains the following InterPro domains- Ribosome maturation protein SBDS, C-terminal (InterPro-IPR018978), Ribosome maturation protein SBDS (InterPro-IPR002140), Ribosome maturation protein SBDS, N-terminal (InterPro-IPR019783), Ribosome maturation protein SBDS, conserved site (InterPro-IPR018023); Has 1053 Blast hits to 1042 proteins in 349 species- Archae - 219; Bacteria - 2; Metazoa - 264; Fungi - 287; Plants - 65; Viruses - 0; Other Eukaryotes - 216 (source- NCBI BLink) (370 aa)    
Predicted Functional Partners:
NMD3
Nonsense-mediated mRNA decay NMD3 family protein; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit (516 aa)
     
 
  0.997
CPR
Metallopeptidase M24 family protein; Binds RNA. Associates with 28S, 18S and 5.8S mature rRNAs, several rRNA precursors and probably U3 small nucleolar RNA. May be involved in regulation of intermediate and late steps of rRNA processing. May be involved in ribosome assembly (By similarity). Required for expression of cell cycle genes such as CYCD3-1, RNR2A and CDKB1-1. Promotes, in a dose- and auxin- dependent manner, organ growth by stimulating both cell proliferation and expansion, via the regulation of RBR1 levels; Belongs to the peptidase M24 family (401 aa)
     
 
  0.992
AT1G25260
Ribosomal protein L10 family protein; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (235 aa)
     
 
  0.986
AT2G44860
Probable ribosome biogenesis protein RLP24; Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of NOG1 to pre-60S particles (159 aa)
   
 
  0.985
AT4G15770
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
 
  0.983
AT3G22980
Ribosomal protein S5/Elongation factor G/III/V family protein; Its function is described as translation factor activity, nucleic acid binding, GTP binding, GTPase activity; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 22 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Protein synthesis factor, GTP-binding (InterPro-IPR000795), Small GTP-binding protein (InterPro-IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro-IPR000640), Translation elongation factor EFTu/EF1A, domain 2 [...] (1015 aa)
   
 
  0.982
eIF6A
Eukaryotic translation initiation factor 6-2; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis; Belongs to the eIF-6 family (245 aa)
   
 
  0.981
eIF6B
Eukaryotic translation initiation factor 6-1; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis; Belongs to the eIF-6 family (247 aa)
   
 
  0.980
AT3G22660
Probable rRNA-processing protein EBP2 homolog; Required for the processing of the 27S pre-rRNA (By similarity). Plays an important role in plant growth and senescence by modulating ribosome biogenesis in nucleolus. Associates with ribosomes (293 aa)
     
 
  0.976
AT2G37990
Ribosome biogenesis regulatory protein (RRS1) family protein; Involved in ribosome biogenesis (318 aa)
     
   
  0.963
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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