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RABC1 protein (Arabidopsis thaliana) - STRING interaction network
"RABC1" - RAB GTPASE HOMOLOG B18 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RABC1RAB GTPASE HOMOLOG B18; Intracellular vesicle trafficking and protein transport (212 aa)    
Predicted Functional Partners:
RABC2A
RAB GTPase-C2A; Intracellular vesicle trafficking and protein transport (210 aa)
   
 
0.908
AT5G58510
Uncharacterized protein (963 aa)
     
 
  0.904
AT5G55060
Uncharacterized protein (662 aa)
     
 
  0.904
RABC2b
RAB GTPase homolog C2B; Intracellular vesicle trafficking and protein transport (205 aa)
   
   
0.901
AT3G14910
Uncharacterized protein (455 aa)
         
  0.901
AT2G36680
Modifier of rudimentary (Mod(r)) protein; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs) (By similarity) (218 aa)
     
      0.868
VPS37-1
Modifier of rudimentary (Mod(r)) protein; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs) (By similarity) (217 aa)
       
      0.847
VPS28-1
Vacuolar protein sorting-associated protein 28-1; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association to the ESCRT-0 complex (By similarity) (209 aa)
       
      0.611
VPS28-2
Vacuolar protein sorting-associated protein 28-2; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association to the ESCRT-0 complex (By similarity) (210 aa)
       
      0.611
AT3G16940
Calmodulin-binding transcription activator; Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5’- [ACG]CGCG[GTC]-3’ (845 aa)
           
  0.560
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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