STRINGSTRING
AT1G43980 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G43980" - Tetratricopeptide repeat in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G43980Tetratricopeptide repeat (TPR)-like superfamily protein (621 aa)    
Predicted Functional Partners:
AT5G27300
Pentatricopeptide (PPR) repeat-containing protein (575 aa)
           
  0.864
AT4G17910
Transferase (434 aa)
           
  0.864
AT3G60960
Pentatricopeptide repeat-containing protein (403 aa)
           
  0.864
AT5G27650
PWWP domain-containing protein (1072 aa)
           
  0.862
EVE1
Ubiquitin family protein (263 aa)
           
  0.774
CHX18
cation/H+ exchanger 18; May operate as a cation/H(+) antiporter (810 aa)
           
  0.670
AT5G38850
TIR-NBS-LRR class disease resistance protein (986 aa)
           
  0.670
DEG14
Putative protease Do-like 14; Putative serine protease (428 aa)
     
   
  0.559
COX15
Cytochrome c oxidase 15; May be involved in the biosynthesis of heme A (457 aa)
     
   
  0.469
SURF1
SURFEIT 1; Probably involved in the biogenesis of the COX complex (354 aa)
     
   
  0.449
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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