• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G44180 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G44180" - Peptidase M20/M25/M40 family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G44180Peptidase M20/M25/M40 family protein; Its function is described as hydrolase activity, aminoacylase activity; Involved in metabolic process, cellular amino acid metabolic process; Located in endomembrane system, cytoplasm; Expressed in male gametophyte, pollen tube; Expressed during L mature pollen stage; Contains the following InterPro domains- Peptidase M20 (InterPro-IPR002933), N-acyl-L-amino-acid amidohydrolase (InterPro-IPR010159); BEST Arabidopsis thaliana protein match is- Peptidase M20/M25/M40 family protein (TAIR-AT1G44820.1); Has 4667 Blast hits to 4663 proteins in 1414 speci [...] (435 aa)    
Predicted Functional Partners:
AT5G42320
Zn-dependent exopeptidases superfamily protein; Its function is described as metallocarboxypeptidase activity, zinc ion binding; Involved in proteolysis; Located in membrane; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Peptidase M14, carboxypeptidase A (InterPro-IPR000834); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (379 aa)
     
 
  0.651
AT4G24830
Argininosuccinate synthase, chloroplastic; Arginosuccinate synthase family; Its function is described as argininosuccinate synthase activity, ATP binding; Involved in arginine biosynthetic process; Located in chloroplast stroma, chloroplast; Expressed in 25 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Rossmann-like alpha/beta/alpha sandwich fold (InterPro-IPR014729), Argininosuccinate synthase, conserved site (InterPro-IPR018223), Argininosuccinate synthase (InterPro-IPR001518); Has 8298 Blast hits to 8290 proteins in 2389 species- Archa [...] (494 aa)
   
 
  0.649
AT5G10920
Argininosuccinate lyase, chloroplastic; L-Aspartase-like family protein; Its function is described as argininosuccinate lyase activity, catalytic activity; Involved in arginine biosynthetic process via ornithine, arginine biosynthetic process; Located in chloroplast, chloroplast stroma; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Argininosuccinate lyase (InterPro-IPR009049), L-Aspartase-like (InterPro-IPR008948), Fumarate lyase, conserved site (InterPro-IPR020557), Lyase 1, N-terminal (InterPro-IPR022761), Delta crystall [...] (517 aa)
   
   
  0.644
OTC
Ornithine carbamoyltransferase, chloroplastic; Ornithine carbamoyltransferase (OTC); Its function is described as amino acid binding, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity; Involved in cellular amino acid metabolic process; Located in chloroplast, chloroplast stroma; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding (InterPro-IPR006132), Aspartate/ornithine carbamoyltransferase (InterPro-IPR006130), Aspartate/ornithine c [...] (375 aa)
         
  0.636
P5CR
Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis (276 aa)
         
  0.632
AT4G29490
Metallopeptidase M24 family protein; Its function is described as manganese ion binding, aminopeptidase activity; Involved in cellular process; Located in chloroplast; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro-IPR007865), Peptidase M24, structural domain (InterPro-IPR000994); BEST Arabidopsis thaliana protein match is- Metallopeptidase M24 family protein (TAIR-AT1G09300.1); Has 11688 Blast hits to 11680 proteins in 2580 species- Archae - 275; Bact [...] (486 aa)
   
 
  0.591
AT4G13720
Inosine triphosphate pyrophosphatase family protein; Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5’-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions (206 aa)
         
  0.586
GFAT
Glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases; Its function is described as sugar binding, transaminase activity, glutamine-fructose-6-phosphate transaminase (isomerizing) activity; Involved in carbohydrate biosynthetic process, carbohydrate metabolic process, metabolic process; Located in cytoplasm; Expressed in 20 plant structures; Expressed during 12 growth stages; Contains the following InterPro domains- Glutamine amidotransferase, class-II (InterPro-IPR000583), Sugar isomerase (SIS) (InterPro-IPR001347), Glucosamine-fructose-6-phosphate ami [...] (677 aa)
   
 
  0.563
UPL5
E3 ubiquitin-protein ligase UPL5; E3 ubiquitin protein ligase that regulates leaf senescence through ubiquitination and subsequent degradation of WRKY53 (873 aa)
       
 
  0.533
AT5G25440
Protein kinase superfamily protein; Its function is described as protein kinase activity, kinase activity, ATP binding; Involved in protein amino acid phosphorylation, N-terminal protein myristoylation; Located in nucleus, cytoplasm; Expressed in 15 plant structures; Expressed during 9 growth stages; Contains the following InterPro domains- Protein kinase, catalytic domain (InterPro-IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro-IPR001245), Protein kinase-like domain (InterPro-IPR011009); BEST Arabidopsis thaliana protein match is- Protein kinase superfamily protein (TA [...] (313 aa)
           
  0.511
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (13%) [HD]