STRINGSTRING
PME7 protein (Arabidopsis thaliana) - STRING interaction network
"PME7" - Pectin methylesterase 7 in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PME7Pectin methylesterase 7; Acts in the modification of cell walls via demethylesterification of cell wall pectin (246 aa)    
Predicted Functional Partners:
AT2G15460
Pectin lyase-like superfamily protein (402 aa)
   
 
  0.740
AT1G17150
Pectin lyase-like protein (402 aa)
   
 
  0.724
AT5G49215
Pectin lyase-like superfamily protein (449 aa)
       
  0.714
AT5G48140
Pectin lyase-like superfamily protein (395 aa)
       
  0.714
AT5G44840
Pectin lyase-like superfamily protein (381 aa)
       
  0.714
AT5G44830
Pectin lyase-like superfamily protein (332 aa)
       
  0.714
AT5G41870
Pectin lyase-like superfamily protein (449 aa)
       
  0.714
AT5G39910
Pectin lyase-like superfamily protein (373 aa)
       
  0.714
AT5G27530
Pectin lyase-like superfamily protein (458 aa)
       
  0.714
AT5G17200
Polygalacturonase (421 aa)
       
  0.714
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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