• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
BGAL5 protein (Arabidopsis thaliana) - STRING interaction network
"BGAL5" - Beta-galactosidase 5 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BGAL5Beta-galactosidase 5 (BGAL5); Its function is described as cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; Involved in lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; Located in endomembrane system; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Glycoside hydrolase, family 35, conserved site (InterPro-IPR019801), Glycoside hydrolase family [...] (732 aa)    
Predicted Functional Partners:
AT1G48950
C3HC zinc finger-like ; Its function is described as zinc ion binding; Involved in biological_process unknown; Located in nucleus, chloroplast; Expressed in 24 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Zinc finger, C3HC-like (InterPro-IPR012935); BEST Arabidopsis thaliana protein match is- IAP-like protein 1 (TAIR-AT1G17210.1); Has 249 Blast hits to 238 proteins in 100 species- Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 80; Plants - 75; Viruses - 0; Other Eukaryotes - 19 (source- NCBI BLink) (594 aa)
           
  0.808
AT2G19550
alpha/beta-Hydrolases superfamily protein; Contains the following InterPro domains- Alpha/beta hydrolase fold-1 (InterPro-IPR000073); BEST Arabidopsis thaliana protein match is- alpha/beta-Hydrolases superfamily protein (TAIR-AT3G47590.1); Has 2529 Blast hits to 2526 proteins in 648 species- Archae - 23; Bacteria - 1261; Metazoa - 31; Fungi - 57; Plants - 183; Viruses - 7; Other Eukaryotes - 967 (source- NCBI BLink) (332 aa)
           
  0.779
AT1G15240
Phox-associated domain;Phox-like;Sorting nexin, C-terminal; Contains the following InterPro domains- PX-associated, sorting nexin 13 (InterPro-IPR013996), Sorting nexin, C-terminal (InterPro-IPR013937), Phox-like (InterPro-IPR001683), Phox-associated domain (InterPro-IPR003114); BEST Arabidopsis thaliana protein match is- Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR-AT2G15900.1); Has 944 Blast hits to 779 proteins in 177 species- Archae - 0; Bacteria - 4; Metazoa - 546; Fungi - 164; Plants - 152; Viruses - 0; Other Eukaryotes - 78 (source- NCBI BLink) (1020 aa)
           
  0.778
AT2G15900
Phox-associated domain;Phox-like;Sorting nexin, C-terminal; Its function is described as phosphoinositide binding; Involved in signal transduction, intracellular signaling pathway; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- PX-associated, sorting nexin 13 (InterPro-IPR013996), Sorting nexin, C-terminal (InterPro-IPR013937), Phox-like (InterPro-IPR001683), Phox-associated domain (InterPro-IPR003114); BEST Arabidopsis thaliana protein match is- Phox-associated domain;Phox-like;Sortin [...] (994 aa)
           
  0.771
OVA1
methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS); OVULE ABORTION 1 (OVA1); Its function is described as methionine-tRNA ligase activity, aminoacyl-tRNA ligase activity, ATP binding; Involved in tRNA aminoacylation for protein translation, ovule development; Located in mitochondrion, chloroplast; Expressed in 23 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Rossmann-like alpha/beta/alpha sandwich fold (InterPro-IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro-IPR013155), Methiony [...] (616 aa)
       
      0.715
DELTA-VPE
Vacuolar-processing enzyme delta-isozyme; Asparagine-specific endopeptidase that may be involved in processing of proteins targeted to vacuoles (By similarity). Probably involved in post-translational proteolysis of seed storage proteins in the protein storage vacuole of developing seeds. Exhibits a caspase-1- like activity in extracellular granules. At the early stage of seed development, required for the formation of the seed coat, by regulating cell death of specific cell layers in inner integument (571 aa)
           
  0.663
MDAR6
Monodehydroascorbate reductase, chloroplastic/mitochondrial; Catalyzes the conversion of monodehydroascorbate (MDA) to ascorbate, oxidizing NADH in the process. Can also use 2,4,6- trinitrotoluene (TNT) and 1-chloro-2,4-dinitrobenzene (CDNB) as substrates, but not 1-chloro-4-nitrobenzene (CNB); Belongs to the FAD-dependent oxidoreductase family (493 aa)
     
   
  0.576
AT1G74070
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) (317 aa)
           
  0.556
TBL7
Protein trichome berefringence-like 7; Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication) (445 aa)
           
  0.549
FUC1
Alpha-L-fucosidase 1; Encodes a protein with &#945;-fucosidase activity. The activity was assessed on 2’-fucosyl-lactitol. AtFUC1 was not able to act on XXFG substrates, at least when heterologously expressed in <i>Pichia pastoris</i>. The enzyme has been postulated to act on fucosylated substrates other than xyloglucan oligosaccharides. was shown (<i>Pichia pastoris</i>) to hydrolyze fucose in 3- and 4-linkage , hence was characterized as alpha-L-3,4-fucosidase; Belongs to the glycosyl hydrolase 29 family (506 aa)
 
     
  0.541
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (8%) [HD]