STRINGSTRING
VFB1 protein (Arabidopsis thaliana) - STRING interaction network
"VFB1" - VIER F-box protein 1 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VFB1VIER F-box protein 1 (518 aa)    
Predicted Functional Partners:
SLOMO
SLOW MOTION (990 aa)
     
   
  0.640
AT4G39750
F-box-related protein (146 aa)
           
  0.636
HSP60-3A
Chaperonin CPN60-like 2; Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix (By similarity) (572 aa)
           
  0.590
AT2G03460
Galactose oxidase/kelch-like protein (257 aa)
           
  0.560
AT1G26930
F-box/kelch-repeat protein (421 aa)
           
  0.560
AT5G40680
Kelch repeat-containing protein (415 aa)
           
  0.559
AT1G74510
F-box/kelch-repeat protein (451 aa)
           
  0.555
PAF2
20S proteasome alpha subunit F2; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. May play a role in thiol biosynthesis and arsenic tolerance in association with PAF1/ARS5 (277 aa)
           
  0.554
AT2G02870
F-box/kelch-repeat protein SKIP11; Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (467 aa)
     
   
  0.541
AT1G14330
F-box/kelch-repeat protein SKIP11 (441 aa)
     
   
  0.527
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (17%) [HD]