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STRINGSTRING
AT1G47395 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G47395" - Uncharacterized protein At1g47390 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
AT1G47395Uncharacterized protein At1g47390; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G47400.1); Has 9 Blast hits to 9 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (50 aa)    
Predicted Functional Partners:
AT1G13609
Encodes a defensin-like (DEFL) family protein; Belongs to the DEFL family (78 aa)
     
   
  0.902
AT2G30766
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (47 aa)
     
   
  0.884
AT2G14247
Uncharacterized protein At2g14247; Expressed protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (78 aa)
     
   
  0.815
AT5G05250
AT5g05250/K18I23_5; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G56360.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (239 aa)
     
   
  0.789
AT5G04010
F-box family protein; Contains the following InterPro domains- F-box domain, Skp2-like (InterPro-IPR022364); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G03920.1); Has 37 Blast hits to 37 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (287 aa)
           
  0.699
BHLH100
Basic helix-loop-helix protein 100; Plays a role in metal homeostasis. Confers tolerance to high zinc (Zn) and nickel (Ni) (242 aa)
     
   
  0.696
AT3G56360
Uncharacterized protein At3g56360; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; Expressed in 24 plant structures; Expressed during 15 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G05250.1); Has 45 Blast hits to 45 proteins in 13 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (233 aa)
     
   
  0.687
bHLH38
Encodes a member of the basic helix-loop-helix transcription factor family protein (253 aa)
     
   
  0.675
CGLD27
Protein CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27, chloroplastic; Required for growth in low iron conditions (327 aa)
     
   
  0.650
ORG1
Probable plastid-lipid-associated protein 14, chloroplastic; Directly regulated by DOF3.6/OBP3; unknown function (670 aa)
     
   
  0.630
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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