STRINGSTRING
AT1G47400 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G47400" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G47400Uncharacterized protein (50 aa)    
Predicted Functional Partners:
AT5G05250
Uncharacterized protein (239 aa)
     
   
  0.945
AT1G47395
Uncharacterized protein (50 aa)
     
   
  0.921
bHLH39
Basic helix-loop-helix 39 (258 aa)
     
   
  0.763
BHLH101
Transcription factor bHLH101 (240 aa)
     
   
  0.757
FRO3
Ferric reduction oxidase 3; Ferric chelate reductase involved in iron reduction in roots. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates (717 aa)
     
   
  0.735
ORG1
OBP3-responsive gene 1; Directly regulated by DOF3.6/OBP3; unknown function (670 aa)
     
   
  0.686
AT5G04010
F-box protein (287 aa)
           
  0.675
AT5G38820
Encodes a putative amino acid transporter (456 aa)
           
  0.674
AT1G26920
Uncharacterized protein (173 aa)
           
  0.670
GLT1
Glutamate synthase 1 [NADH]; Involved in glutamate biosynthesis. Required for non- photorespiratory ammonium assimilation. Probably involved in primary ammonium assimilation in roots (2208 aa)
     
        0.664
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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