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STRINGSTRING
AT1G47400 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G47400" - Unknown protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
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Cooccurence
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Experiments
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[Homology]
Score
AT1G47400Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G47395.1); Has 11 Blast hits to 11 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (50 aa)    
Predicted Functional Partners:
AT5G05250
AT5g05250/K18I23_5; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G56360.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (239 aa)
     
   
  0.965
bHLH39
Encodes a member of the basic helix-loop-helix transcription factor protein (258 aa)
     
   
  0.839
FRO3
Ferric reduction oxidase 3, mitochondrial; Ferric chelate reductase involved in iron reduction in roots. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates (717 aa)
     
   
  0.810
CGLD27
Protein CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27, chloroplastic; Required for growth in low iron conditions (327 aa)
     
   
  0.805
OPT3
Oligopeptide transporter 3; May be involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner. Acts also as a metal transporter that could be a component of the copper transport machinery. Essential for early embryo development (737 aa)
     
   
  0.804
BHLH101
Basic helix-loop-helix (bHLH) DNA-binding superfamily protein; BHLH101; Its function is described as DNA binding, sequence-specific DNA binding transcription factor activity; Involved in regulation of transcription; Located in nucleus; Expressed in root, leaf; Expressed during LP.04 four leaves visible; Contains the following InterPro domains- Helix-loop-helix DNA-binding domain (InterPro-IPR001092), Helix-loop-helix DNA-binding (InterPro-IPR011598); BEST Arabidopsis thaliana protein match is- basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR-AT3G56970.1); Has 1807 Bl [...] (240 aa)
     
   
  0.796
ORG1
Probable plastid-lipid-associated protein 14, chloroplastic; Directly regulated by DOF3.6/OBP3; unknown function (670 aa)
     
   
  0.792
AT1G13609
Encodes a defensin-like (DEFL) family protein; Belongs to the DEFL family (78 aa)
     
   
  0.784
NAS4
Probable nicotianamine synthase 4; Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron (324 aa)
     
   
  0.750
AT3G07720
Galactose oxidase/kelch repeat superfamily protein; Contains the following InterPro domains- Galactose oxidase/kelch, beta-propeller (InterPro-IPR011043), Kelch repeat type 1 (InterPro-IPR006652), Kelch-type beta propeller (InterPro-IPR015915); BEST Arabidopsis thaliana protein match is- nitrile specifier protein 5 (TAIR-AT5G48180.1); Has 10920 Blast hits to 5857 proteins in 349 species- Archae - 8; Bacteria - 366; Metazoa - 5368; Fungi - 1057; Plants - 2178; Viruses - 16; Other Eukaryotes - 1927 (source- NCBI BLink) (329 aa)
     
   
  0.736
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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