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AT1G47540 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G47540" - Defensin-like protein 192 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G47540Defensin-like protein 192 (99 aa)    
Predicted Functional Partners:
AT5G35950
Jacalin lectin family protein (444 aa)
           
  0.865
AT3G21380
Mannose-binding lectin superfamily protein (460 aa)
           
  0.862
AT5G23575
Transmembrane CLPTM1 family protein (593 aa)
           
  0.808
AT1G52070
Mannose-binding lectin superfamily protein (315 aa)
           
  0.808
SESA5
Seed storage albumin 5; This is a 2S seed storage protein (165 aa)
     
   
  0.781
SESA4
Seed storage albumin 4; This is a 2S seed storage protein (166 aa)
     
   
  0.746
AT5G54860
Major facilitator protein; Could mediate folate transport (491 aa)
           
  0.739
MEE8
Transcription factor MEE8; Required during early embryo development, for the endosperm formation (145 aa)
     
   
  0.689
SESA2
Seed storage albumin 2; This is a 2S seed storage protein (170 aa)
     
   
  0.685
SESA1
Seed storage albumin 1; This is a 2S seed storage protein (164 aa)
     
   
  0.677
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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