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AT1G47610 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G47610" - WD40 domain-containing protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G47610WD40 domain-containing protein (351 aa)    
Predicted Functional Partners:
AT3G11000
DCD (Development and Cell Death) domain protein (607 aa)
           
  0.868
AT3G04960
Uncharacterized protein (605 aa)
           
  0.861
AT5G14530
transducin/WD40 domain-containing protein (330 aa)
   
 
 
  0.823
AT5G66240
transducin/WD40 domain-containing protein (331 aa)
   
 
 
  0.819
ENDO3
Endonuclease 3; Probable endonuclease (By similarity). Can not hydrolyze single-stranded DNA and does not cleave mismatches (294 aa)
     
   
  0.815
AT1G02190
Putative CER1 protein (627 aa)
           
  0.809
CPSF73-II
Cleavage and polyadenylation specificity factor subunit 3-II; Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3’-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. May function as mRNA 3’-end- processing endonuclease and also be involved in the histone 3’-end pre-mRNA processing (613 aa)
     
 
  0.692
FIP1[V]
FIP1 [V]-like protein; Essential gene (PubMed-16282318). Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3’-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex (By similarity) (1196 aa)
     
 
  0.684
EMB1789
Embryo defective 1789; Possesses RNA-binding and ribonuclease activities in vitro (675 aa)
     
 
  0.681
CPSF30
Cleavage and polyadenylation specificity factor 30; Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3’-end formation. May interact with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition (By similarity). Mediates poly(A) site selection (PubMed-23136375). Binds RNA in a calcium-dependent manner (PubMed-16500995, PubMed-17576667, PubMed-20214900). Exhibits endonuclease activity with an ability to nick and degrade linear as well as circular single-stranded RNA that leaves RNA 3’ ends with hydro [...] (631 aa)
     
 
  0.681
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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