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STRINGSTRING
AT1G47640 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G47640" - Seven transmembrane domain protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
AT1G47640Seven transmembrane domain protein; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in mitochondrion; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Protein of unknown function DUF2053, membrane (InterPro-IPR019164); Has 204 Blast hits to 204 proteins in 84 species- Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source- NCBI BLink) (228 aa)    
Predicted Functional Partners:
PFD5
Probable prefoldin subunit 5; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (By similarity) (151 aa)
     
        0.912
AT3G57000
Nucleolar essential protein-related; Contains the following InterPro domains- Ribosomal biogenesis, methyltransferase, EMG1/NEP1 (InterPro-IPR005304); Has 1079 Blast hits to 938 proteins in 280 species- Archae - 143; Bacteria - 12; Metazoa - 353; Fungi - 181; Plants - 69; Viruses - 2; Other Eukaryotes - 319 (source- NCBI BLink) (298 aa)
     
        0.905
MEE4
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) (143 aa)
     
        0.902
AT2G33220
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) (143 aa)
     
        0.901
AT3G44330
Nicalin; May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning (565 aa)
     
   
  0.832
AT2G02050
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) (103 aa)
     
        0.790
AT3G62360
Uncharacterized protein T12C14_60; Carbohydrate-binding-like fold; Its function is described as carbohydrate binding; Located in endoplasmic reticulum, plasma membrane, plant-type cell wall; Expressed in 25 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Carbohydrate-binding-like fold (InterPro-IPR013784); Has 321 Blast hits to 256 proteins in 98 species- Archae - 6; Bacteria - 117; Metazoa - 138; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 27 (source- NCBI BLink) (1227 aa)
     
   
  0.741
AT5G07960
Unknown protein; Contains the following InterPro domains- Uncharacterised protein family UPF0139 (InterPro-IPR005351); Has 193 Blast hits to 193 proteins in 75 species- Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source- NCBI BLink) (107 aa)
     
        0.739
AT1G77350
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Protein of unknown function KRTCAP2 (InterPro-IPR018614); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (122 aa)
     
   
  0.736
AT3G54085
Yos1-like protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Contains the following InterPro domains- Yos1-like (InterPro-IPR013880); BEST Arabidopsis thaliana protein match is- Yos1-like protein (TAIR-AT2G37975.1); Has 203 Blast hits to 203 proteins in 88 species- Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 32; Plants - 51; Viruses - 0; Other Eukaryotes - 15 (source- NCBI BLink) (78 aa)
     
   
  0.708
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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