• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G47655 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G47655" - Dof-type zinc finger DNA-binding family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G47655Dof-type zinc finger DNA-binding family protein; Transcription factor that binds specifically to a 5’- AA[AG]G-3’ consensus core sequence (209 aa)    
Predicted Functional Partners:
AT1G24000
Polyketide cyclase/dehydrase and lipid transport superfamily protein; Its function is described as molecular_function unknown; Involved in response to biotic stimulus, defense response; Located in cellular_component unknown; Expressed in embryo, pedicel, flower; Expressed during 4 anthesis, C globular stage, petal differentiation and expansion stage; Contains the following InterPro domains- Bet v I allergen (InterPro-IPR000916); BEST Arabidopsis thaliana protein match is- Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR-AT1G23910.1); Has 193 Blast hits to 168 [...] (122 aa)
           
  0.969
MLP28
MLP-like protein 28; Can bind steroids (in vitro), and may also bind other types of hydrophobic ligands (335 aa)
           
  0.903
MLP34
MLP-like protein 34 (MLP34); Its function is described as molecular_function unknown; Involved in response to biotic stimulus, defense response; Located in cellular_component unknown; Expressed in 6 plant structures; Expressed during 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- Bet v I allergen (InterPro-IPR000916); BEST Arabidopsis thaliana protein match is- MLP-like protein 28 (TAIR-AT1G70830.1); Has 961 Blast hits to 551 proteins in 58 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 961; Viruses - 0; Other Eukary [...] (316 aa)
           
  0.833
AT4G23780
Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G23770.1); Has 51 Blast hits to 49 proteins in 22 species- Archae - 0; Bacteria - 9; Metazoa - 12; Fungi - 0; Plants - 14; Viruses - 2; Other Eukaryotes - 14 (source- NCBI BLink) (148 aa)
           
  0.779
AT4G23670
Polyketide cyclase/dehydrase and lipid transport superfamily protein; Its function is described as copper ion binding; Involved in response to cadmium ion, response to salt stress, defense response to bacterium; Located in vacuole; Expressed in 24 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Bet v I allergen (InterPro-IPR000916); BEST Arabidopsis thaliana protein match is- Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR-AT4G23680.1); Has 355 Blast hits to 331 proteins in 39 species- Archae - 0; Bacteria - 0; Me [...] (151 aa)
           
  0.770
AT1G14950
Polyketide cyclase/dehydrase and lipid transport superfamily protein; Its function is described as molecular_function unknown; Involved in response to biotic stimulus, defense response; Located in cellular_component unknown; Expressed in seed; Contains the following InterPro domains- Bet v I allergen (InterPro-IPR000916); BEST Arabidopsis thaliana protein match is- Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR-AT1G14930.1); Has 414 Blast hits to 387 proteins in 49 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 414; Viruses - 0; Other Eu [...] (155 aa)
           
  0.665
MLP43
MLP-like protein 43 (MLP43); Its function is described as molecular_function unknown; Involved in response to biotic stimulus, defense response; Located in chloroplast; Expressed in 17 plant structures; Expressed during 10 growth stages; Contains the following InterPro domains- Bet v I allergen (InterPro-IPR000916); BEST Arabidopsis thaliana protein match is- MLP-like protein 28 (TAIR-AT1G70830.5); Has 440 Blast hits to 408 proteins in 49 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 440; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (158 aa)
           
  0.641
MLP423
MLP-like protein 423 (MLP423); Involved in response to biotic stimulus, defense response; Expressed in 22 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Bet v I allergen (InterPro-IPR000916); BEST Arabidopsis thaliana protein match is- MLP-like protein 28 (TAIR-AT1G70830.3) (155 aa)
           
  0.569
AT5G24340
3’-5’ exonuclease domain-containing protein; Its function is described as 3’-5’ exonuclease activity, nucleic acid binding; Involved in nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; Located in intracellular; Expressed in 8 plant structures; Expressed during 6 growth stages; Contains the following InterPro domains- Protein of unknown function DUF82 (InterPro-IPR002782), Polynucleotidyl transferase, ribonuclease H fold (InterPro-IPR012337), 3'-5' exonuclease (InterPro-IPR002562); BEST Arabidopsis thaliana protein match is- Polynucleotidyl transferase, r [...] (505 aa)
           
  0.493
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (8%) [HD]