STRINGSTRING
SERPIN1 protein (Arabidopsis thaliana) - STRING interaction network
"SERPIN1" - serpin-ZX in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERPIN1serpin-ZX; Inhibits metacaspase-9 cysteine protease (391 aa)    
Predicted Functional Partners:
RD21A
Cysteine proteinase RD21a (462 aa)
       
 
  0.978
MC9
Metacaspase 9; Cysteine protease that cleaves specifically after arginine or lysine residues. Does not cleave caspase-specific substrates. Required for proteolytic processing of GRI (PubMed-25398910) (325 aa)
           
  0.957
RD19
Cysteine proteinase RD19a (368 aa)
       
  0.926
AT5G39410
Saccharopine dehydrogenase (454 aa)
     
 
    0.918
SRP3
Serpin 3; Probable serine protease inhibitor (385 aa)
   
   
0.906
AT2G35580
Serine protease inhibitor-like protein (374 aa)
   
   
0.906
SRP2
Serpin 2; Probable serine protease inhibitor (407 aa)
   
   
0.906
SGR4
SHOOT GRAVITROPSIM 4; May function as a v-SNARE responsible for targeting AtELP-containing vesicles from the trans-Golgi network (TGN) to the prevacuolar compartment (PVC). May be also involved in retrograde traffic to the cis-Golgi (By similarity). Promotes the formation of vacuolar membrane ’bulbs’. Required for amyloplast sedimentation in the endodermis during shoot gravitropism, which are thus acting as statoliths. Expression in the endodermis is essential for the shoot gravitropic response, whereas expression in other tissues may be responsible for the correct stem and leaf shape (221 aa)
     
 
    0.906
AT3G45220
serpin-Z4; Probable serine protease inhibitor (393 aa)
   
   
0.904
AT4G16190
Papain family cysteine protease (373 aa)
       
    0.904
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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