STRINGSTRING
AT1G47970 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G47970" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G47970Uncharacterized protein (198 aa)    
Predicted Functional Partners:
AT5G67200
Putative inactive receptor kinase (669 aa)
     
        0.438
AT5G23680
Sterile alpha motif (SAM) domain-containing protein (295 aa)
     
        0.438
NF-YB11
Nuclear factor Y, subunit B11 (275 aa)
     
        0.438
AT4G32930
Uncharacterized protein (175 aa)
     
        0.437
AT4G26630
DEK domain-containing chromatin associated protein (763 aa)
     
        0.437
AT4G12240
C2H2 type zinc finger protein (364 aa)
     
        0.437
WTF9
What’s this factor 9 (387 aa)
     
        0.437
AT2G15980
Pentatricopeptide repeat-containing protein (498 aa)
     
        0.437
ORF141
Hypothetical protein.[Source-TAIR;Acc-ATMG00500] (141 aa)
     
        0.436
SDN3
Small RNA degrading nuclease 3; 3’-5’ exonuclease degrading single-stranded small RNAs (782 aa)
     
        0.436
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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