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AT1G48090 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G48090" - Calcium-dependent lipid-binding family protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G48090Calcium-dependent lipid-binding family protein; Its function is described as phosphoinositide binding; Involved in signal transduction; Located in chloroplast; Expressed in 26 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- C2 membrane targeting protein (InterPro-IPR018029), Protein of unknown function DUF946 (InterPro-IPR009291), Vacuolar protein sorting-associated protein (InterPro-IPR009543), C2 calcium/lipid-binding domain, CaLB (InterPro-IPR008973); BEST Arabidopsis thaliana protein match is- pleckstrin homology (PH) domain-containing [...] (4146 aa)    
Predicted Functional Partners:
AT5G23110
Zinc finger, C3HC4 type (RING finger) family protein; Its function is described as zinc ion binding, ATP binding; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Zinc finger, RING-type (InterPro-IPR001841), ATPase-like, ATP-binding domain (InterPro-IPR003594); BEST Arabidopsis thaliana protein match is- Transmembrane Fragile-X-F-associated protein (TAIR-AT1G73950.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (so [...] (4706 aa)
     
   
  0.972
UPL1
E3 ubiquitin-protein ligase UPL1; Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins (3930 aa)
     
        0.937
UPL2
Encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis (3658 aa)
     
        0.923
BIG
Auxin transport protein (BIG); Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development). Controls the elongation of the pedicels and stem internodes through auxin action. Involved in the expression modulation of light-regulated genes. Represses CAB1 and CAB3 genes expression in etiolated seedlings. Confers sensitivity to the auxin transport inhibitors N-1-naphthylphthalamic acid (NPA), 2-carboxyphenyl-3- phenyl [...] (5098 aa)
     
   
  0.834
AT2G36810
ARM repeat superfamily protein; Involved in inflorescence stems gravitropism, by modulating vacuolar membrane (VMs) dynamics in gravity-sensing cells (e.g. endodermal cells) during the amyloplast sedimentation process (1716 aa)
     
   
  0.757
CHR4
Protein CHROMATIN REMODELING 4; Chromatin-remodeling protein that binds DNA through histones and regulates gene transcription. May specifically recognize and bind trimethylated ’Lys-27’ (H3K27me3) and non- methylated ’Lys-4’ of histone H3 (By similarity). Probable chromatin remodeling factor (2223 aa)
     
        0.696
ADF5
Actin-depolymerizing factor 5; Actin-depolymerizing protein. Severs actin filaments (F- actin) and binds to actin monomers (143 aa)
     
   
  0.695
AT2G07725.1
Ribosomal L5P family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in ribosome, intracellular; Contains the following InterPro domains- Ribosomal protein L5 (InterPro-IPR002132), Ribosomal protein L5, N-terminal (InterPro-IPR020927); BEST Arabidopsis thaliana protein match is- ribosomal protein L5 (TAIR-ATMG00210.1); Has 117 Blast hits to 117 proteins in 56 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink) (185 aa)
           
  0.662
AT5G57290
60S acidic ribosomal protein family; Plays an important role in the elongation step of protein synthesis (120 aa)
           
  0.644
AT4G25890
60S acidic ribosomal protein family; Plays an important role in the elongation step of protein synthesis (119 aa)
           
  0.644
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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