STRINGSTRING
AT1G48460 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G48460" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G48460Uncharacterized protein (340 aa)    
Predicted Functional Partners:
AT1G48570
Zinc finger (Ran-binding) family protein (455 aa)
     
        0.676
EMB2001
GTP-binding protein (300 aa)
     
        0.592
ATWHY2
WHIRLY 2; Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo (238 aa)
     
        0.555
PRIN2
Uncharacterized protein (179 aa)
     
        0.517
PDE340
PIGMENT DEFECTIVE 340 (850 aa)
     
        0.506
ROC2
Rotamase cyclophilin 2; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (176 aa)
     
        0.496
WHY3
WHIRLY 3; Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology- dependent illegitimate recombinations. In the nucleus, is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Can bind double- stranded DNA in vivo (268 aa)
     
        0.477
dNK
Deoxyribonucleoside kinase (580 aa)
     
        0.476
AT3G18600
DEAD-box ATP-dependent RNA helicase 51 (568 aa)
     
        0.468
AT4G30800
40S ribosomal protein S11-2 (159 aa)
     
        0.441
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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