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AT1G48460 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G48460" - tRNA-processing ribonuclease BN in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G48460tRNA-processing ribonuclease BN; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast envelope; Expressed in 21 plant structures; Expressed during 13 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G63040.1); Has 60 Blast hits to 60 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (340 aa)    
Predicted Functional Partners:
AT1G48570
Zinc finger (Ran-binding) family protein; Its function is described as binding, zinc ion binding; Located in intracellular, chloroplast; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Zinc finger, RanBP2-type (InterPro-IPR001876); BEST Arabidopsis thaliana protein match is- Ran BP2/NZF zinc finger-like superfamily protein (TAIR-AT1G70650.2); Has 1648 Blast hits to 939 proteins in 174 species- Archae - 0; Bacteria - 8; Metazoa - 430; Fungi - 191; Plants - 717; Viruses - 0; Other Eukaryotes - 302 (source- NCBI BLink) (455 aa)
     
        0.557
EMB2001
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Embryo defective 2001 (EMB2001); Its function is described as GTP binding; Involved in embryo development ending in seed dormancy; Located in intracellular; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- GTP-binding protein, HSR1-related (InterPro-IPR002917), GTP-binding protein, ribosome biogenesis, YsxC (InterPro-IPR019987); BEST Arabidopsis thaliana protein match is- P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR-AT [...] (300 aa)
     
        0.475
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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