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AT1G48570 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G48570" - Zinc finger in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G48570Zinc finger (Ran-binding) family protein (455 aa)    
Predicted Functional Partners:
EMB3108
EMBRYO DEFECTIVE 3108 (581 aa)
     
        0.823
PDE340
PIGMENT DEFECTIVE 340 (850 aa)
     
        0.819
HDA3
Histone deacetylase 3; Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Required for histone H3 ’Lys-9’ deacetylation. Involved in rRNA gene silencing in nucleolar dominance. Seems to be implicated in the regulation of genes involved in seeds development (245 aa)
     
        0.813
PPR596
PENTATRICOPEPTIDE REPEAT 596 (596 aa)
     
        0.809
AT1G52930
Ribosomal RNA processing Brix domain protein (320 aa)
     
        0.804
FLN1
Fructokinase-like 1; Required for proper chloroplast development, most likely through regulating plastid-encoded polymerase (PEP) dependent chloroplast transcription. Acts as a component of the transcriptionally active plastid chromosome that is required for plastid gene expression (471 aa)
     
        0.793
AT3G06530
ARM repeat superfamily protein; Involved in nucleolar processing of pre-18S ribosomal RNA. Involved in ribosome biosynthesis (By similarity) (2199 aa)
     
        0.791
AT1G63660
GMP-synthase-C and glutamine amidotransferase domain-containing protein (534 aa)
     
        0.791
EMB2001
GTP-binding protein (300 aa)
     
        0.787
FLN2
Fructokinase-like 2; Required for proper chloroplast development, most likely through regulating plastid-encoded polymerase (PEP) dependent chloroplast transcription. Acts as a component of the transcriptionally active plastid chromosome that is required for plastid gene expression (616 aa)
     
        0.766
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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